Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq567 208 1e-48 seq685 95.1 2e-14 >seq567 Length=396540 Score = 208 bits (230), Expect = 1e-48 Identities = 225/298 (76%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| |||| || ||||| || || |||||| | |||| || ||| | | ||| Sbjct 54361 GGAAGGCGGTGAAGGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCGG 54420 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| ||| |||| ||||| | |||||||||||||| |||||||||||| | |||| Sbjct 54421 TATTGATGATTTCGAAGCCCACTTTGCCGCCGAAGGTGCTCGGCTTCCAGTACTCGGGGG 54480 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| ||||| |||| || |||||||| ||||| || || |||| ||| | || Sbjct 54481 AGCAGATGGCGTTCCCCATCAGTCCTTTGAGAGAGAAGGGCGCTCCCATCTCCACCATCG 54540 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| |||||||||||| || || ||||||||||| | || || | |||||||||| Sbjct 54541 TCTCGCCGAAGATGGCGCCTGGCCGCGGCTTTTCCACAAGGAGGCCTGGATACAGCTCCA 54600 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 || |||| |||||||||||| | ||||| || || || || ||||||||||| Sbjct 54601 TGGCATCGATGTCTCCGTAAAGCTCTTCCAGTTCAGCCGCCATTTCTTTTTCTCCTGT 54658 Score = 179 bits (198), Expect = 5e-40 Identities = 183/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 9247 AGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACA 9306 |||||||| || ||||| || ||||||||| ||| |||||||| || || || || | Sbjct 56405 AGTCGAGTTGTTTGGAAGAGCTGCTCGTCATCCCACTCTGGATGCTCCTGCTTGAGGATG 56464 Query 9307 TCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACC 9366 || || |||| |||||| ||||| |||||||| || ||||||||||| || || || ||| Sbjct 56465 TCACAGACCCGGTTGTGCTCCCTCAGCCAGATTGTAGCGTACATCATCAGACCCGGGACC 56524 Query 9367 AGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAG 9426 | ||||| |||| || || |||| | ||| || ||| ||||| | ||||| ||| Sbjct 56525 AAACCAAACACCTCCTGCCCCACAGAGAACTGCAGGTGTTCCGGCACGTGCGGAGGGTAG 56584 Query 9427 ATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTG 9485 | ||| | ||||| ||| || |||| |||||||||||||| |||||||||||||| Sbjct 56585 AGCATCTCTGCCTGGGTGTCCTTCACCGTTGGGGGATACATTTCTCCGTCAATCATCTG 56643 >seq685 Length=1810514 Score = 95.1 bits (104), Expect = 2e-14 Identities = 207/310 (67%), Gaps = 0/310 (0%) Strand=Plus/Plus Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336 |||| || || ||||||| | | || ||| ||| |||||| || || || || Sbjct 1604916 CATCTGGCACCTGGAACGCCACGTATGGGCACTTCTTCACGTTGAGGCACACAAGTTTCT 1604975 Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396 || | ||| ||||| ||| | || || ||||||| || || |||||||||| Sbjct 1604976 CAAGTGATGCTGAATTGACTATCTCAAAGCCAGTTGCTCCGCCAAACGTACTGGGCTTCC 1605035 Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456 ||||| | |||||||||||| ||| | | || || || ||||| ||||||| || | Sbjct 1605036 AGTACTCTGGGGAGCAGATGGGGTTTCCGAGAAGCCCCTTCAGGGAAAACGGAGATCCGA 1605095 Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516 ||| | ||||| || || || || | || || | || || || | || || || Sbjct 1605096 TCTCAACCATGCTTTCTCCAAAAATACCATTTGGTTGAGGTTTCTCAAGCAGCAAGCCCA 1605155 Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCT 8576 ||| | ||||| ||| |||| |||||| || || | ||||| || || | || | Sbjct 1605156 GGTAGAACTCCAGAGCGTCGATGTCTCCATACAGCTCTTCCAGTTCTGCTGCCTTTTCTT 1605215 Query 8577 TTTCTCCTGT 8586 |||||||| Sbjct 1605216 CCTCTCCTGT 1605225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716743075593920