Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq567 208 1e-48
seq685 95.1 2e-14
>seq567
Length=396540
Score = 208 bits (230), Expect = 1e-48
Identities = 225/298 (76%), Gaps = 0/298 (0%)
Strand=Plus/Plus
Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348
|||| |||| || ||||| || || |||||| | |||| || ||| | | |||
Sbjct 54361 GGAAGGCGGTGAAGGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCGG 54420
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
| |||| ||| |||| ||||| | |||||||||||||| |||||||||||| | ||||
Sbjct 54421 TATTGATGATTTCGAAGCCCACTTTGCCGCCGAAGGTGCTCGGCTTCCAGTACTCGGGGG 54480
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
|||||||| ||||| |||| || |||||||| ||||| || || |||| ||| | ||
Sbjct 54481 AGCAGATGGCGTTCCCCATCAGTCCTTTGAGAGAGAAGGGCGCTCCCATCTCCACCATCG 54540
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528
|||| |||||||||||| || || ||||||||||| | || || | ||||||||||
Sbjct 54541 TCTCGCCGAAGATGGCGCCTGGCCGCGGCTTTTCCACAAGGAGGCCTGGATACAGCTCCA 54600
Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586
|| |||| |||||||||||| | ||||| || || || || |||||||||||
Sbjct 54601 TGGCATCGATGTCTCCGTAAAGCTCTTCCAGTTCAGCCGCCATTTCTTTTTCTCCTGT 54658
Score = 179 bits (198), Expect = 5e-40
Identities = 183/239 (77%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 9247 AGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACA 9306
|||||||| || ||||| || ||||||||| ||| |||||||| || || || || |
Sbjct 56405 AGTCGAGTTGTTTGGAAGAGCTGCTCGTCATCCCACTCTGGATGCTCCTGCTTGAGGATG 56464
Query 9307 TCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACC 9366
|| || |||| |||||| ||||| |||||||| || ||||||||||| || || || |||
Sbjct 56465 TCACAGACCCGGTTGTGCTCCCTCAGCCAGATTGTAGCGTACATCATCAGACCCGGGACC 56524
Query 9367 AGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAG 9426
| ||||| |||| || || |||| | ||| || ||| ||||| | ||||| |||
Sbjct 56525 AAACCAAACACCTCCTGCCCCACAGAGAACTGCAGGTGTTCCGGCACGTGCGGAGGGTAG 56584
Query 9427 ATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTG 9485
| ||| | ||||| ||| || |||| |||||||||||||| ||||||||||||||
Sbjct 56585 AGCATCTCTGCCTGGGTGTCCTTCACCGTTGGGGGATACATTTCTCCGTCAATCATCTG 56643
>seq685
Length=1810514
Score = 95.1 bits (104), Expect = 2e-14
Identities = 207/310 (67%), Gaps = 0/310 (0%)
Strand=Plus/Plus
Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336
|||| || || ||||||| | | || ||| ||| |||||| || || || ||
Sbjct 1604916 CATCTGGCACCTGGAACGCCACGTATGGGCACTTCTTCACGTTGAGGCACACAAGTTTCT 1604975
Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396
|| | ||| ||||| ||| | || || ||||||| || || ||||||||||
Sbjct 1604976 CAAGTGATGCTGAATTGACTATCTCAAAGCCAGTTGCTCCGCCAAACGTACTGGGCTTCC 1605035
Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456
||||| | |||||||||||| ||| | | || || || ||||| ||||||| || |
Sbjct 1605036 AGTACTCTGGGGAGCAGATGGGGTTTCCGAGAAGCCCCTTCAGGGAAAACGGAGATCCGA 1605095
Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516
||| | ||||| || || || || | || || | || || || | || || ||
Sbjct 1605096 TCTCAACCATGCTTTCTCCAAAAATACCATTTGGTTGAGGTTTCTCAAGCAGCAAGCCCA 1605155
Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCT 8576
||| | ||||| ||| |||| |||||| || || | ||||| || || | || |
Sbjct 1605156 GGTAGAACTCCAGAGCGTCGATGTCTCCATACAGCTCTTCCAGTTCTGCTGCCTTTTCTT 1605215
Query 8577 TTTCTCCTGT 8586
||||||||
Sbjct 1605216 CCTCTCCTGT 1605225
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716743075593920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |