Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11]
14,923 sequences; 1,107,989,085 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq91 127 5e-24
seq12 127 5e-24
>seq91
Length=4318309
Score = 127 bits (140), Expect = 5e-24
Identities = 154/208 (74%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| ||||| || || || || || || || || |||||||||||||| | ||| || |
Sbjct 4012170 CAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGTG 4012227
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
| ||||| ||||| || || ||||| |||||||| ||||| || || || || ||||
Sbjct 4012228 ATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGC 4012287
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || |||||||| || || ||||| |||||||| | ||||| | || || |||
Sbjct 4012288 AGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACTCTGTCTGACTACAACA 4012347
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || ||||| || ||||| || ||
Sbjct 4012348 TCCAGAAGGAATCCACCCTGCACCTGGT 4012375
Score = 113 bits (124), Expect = 1e-19
Identities = 151/208 (73%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || || ||||| || || || || || || |||||||||||||| | ||| || |
Sbjct 4011714 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGTG 4011771
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||| || || ||||| |||||||| ||||| || || || || ||||
Sbjct 4011772 ACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAGC 4011831
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || || || || || || ||||| ||||| || | || || | || || |||
Sbjct 4011832 AGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAACA 4011891
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || ||||| || ||||| || ||
Sbjct 4011892 TCCAGAAGGAATCCACCCTGCACCTGGT 4011919
>seq12
Length=7699506
Score = 127 bits (140), Expect = 5e-24
Identities = 160/216 (74%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || |||||||| || || || || || || |||||||| ||||| ||
Sbjct 4631910 AAAATGC---AGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGA- 4631855
Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032
|| ||| ||||||| || || || || ||||| |||||||| || || || ||||
Sbjct 4631854 -GCCCAGTGACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTC 4631796
Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092
| || ||||| | || |||||||| || || |||||||||||||| | || || | |
Sbjct 4631795 CTGATCAGCAGAGGCTGATCTTCGCTGGTAAGCAGCTCGAAGATGGGCGCACCCTGTCTG 4631736
Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128
| || ||| |||| || ||||| || ||||| ||||
Sbjct 4631735 ACTACAACATCCAGAAGGAATCCACCCTGCA-CTTG 4631701
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203501045466062
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |