Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Columba_20livia_20[refseq_20GCF_5F000337935.1_202013-02-11] 14,923 sequences; 1,107,989,085 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq91 127 5e-24 seq12 127 5e-24 >seq91 Length=4318309 Score = 127 bits (140), Expect = 5e-24 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || ||||| || || || || || || || || |||||||||||||| | ||| || | Sbjct 4012170 CAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGTG 4012227 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| ||||| || || ||||| |||||||| ||||| || || || || |||| Sbjct 4012228 ATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGC 4012287 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| |||||||| | ||||| | || || ||| Sbjct 4012288 AGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACTCTGTCTGACTACAACA 4012347 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || ||||| || || Sbjct 4012348 TCCAGAAGGAATCCACCCTGCACCTGGT 4012375 Score = 113 bits (124), Expect = 1e-19 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || || || || || |||||||||||||| | ||| || | Sbjct 4011714 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGTG 4011771 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| |||||||| ||||| || || || || |||| Sbjct 4011772 ACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAGC 4011831 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || || || || || ||||| ||||| || | || || | || || ||| Sbjct 4011832 AGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAACA 4011891 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || ||||| || || Sbjct 4011892 TCCAGAAGGAATCCACCCTGCACCTGGT 4011919 >seq12 Length=7699506 Score = 127 bits (140), Expect = 5e-24 Identities = 160/216 (74%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || |||||||| || || || || || || |||||||| ||||| || Sbjct 4631910 AAAATGC---AGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGA- 4631855 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| ||||||| || || || || ||||| |||||||| || || || |||| Sbjct 4631854 -GCCCAGTGACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTC 4631796 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | || ||||| | || |||||||| || || |||||||||||||| | || || | | Sbjct 4631795 CTGATCAGCAGAGGCTGATCTTCGCTGGTAAGCAGCTCGAAGATGGGCGCACCCTGTCTG 4631736 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 | || ||| |||| || ||||| || ||||| |||| Sbjct 4631735 ACTACAACATCCAGAAGGAATCCACCCTGCA-CTTG 4631701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203501045466062