Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq253 98.7 1e-15 seq450 84.2 2e-11 >seq253 Length=134823679 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| ||||| |||||||| || ||||| || | ||||| Sbjct 117709157 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTTAATCCGGGCATCAGGCCCCTCTTCTTC 117709098 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAAC 16332 | ||| || |||||||||||||| ||||||||||| || || ||||| Sbjct 117709097 AGCCAAAAAATCGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAAC 117709051 >seq450 Length=100941466 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || || ||||| || | ||||||||||||||| ||||| || || ||||| ||||| Sbjct 88061980 ATGTATGTGTCAATGAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCAATCTGG 88061921 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCC 16570 || |||||||| || || || || | ||||| |||||| Sbjct 88061920 AAGCCATAGAAACAACGTGCTTCTGTGATTTGCACTTCC 88061882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511401537927840