Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq808 113 3e-20 seq253 102 6e-17 >seq808 Length=67000979 Score = 113 bits (124), Expect = 3e-20 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || ||| ||||||| || | |||||||||| |||| || || || ||||||||||| Sbjct 57088592 CTTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTCAAGGGACGATTCTTCTCAGG 57088533 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||| || ||||||||||| |||| | |||||||||| ||| Sbjct 57088532 AATGGAGAACCAGGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCTG 57088483 >seq253 Length=134823679 Score = 102 bits (112), Expect = 6e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||||||||| ||||||||||||||||| ||||| || ||||| | || || | Sbjct 92003690 CTTTGTATTCTGCTCCAAAATGCCTCCACTGAAAACCATAAACTGGTCCCAAGTCCCCCT 92003749 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| |||| || ||||||| | || | || ||||| |||||||||| Sbjct 92003750 CTTCTCTGGTGCAAAACCCCTGTTTATCCAGGAACTCACGTGACCCATTGGCATCCCAAA 92003809 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTG 102181 | | ||| || ||| || ||||||||| Sbjct 92003810 TCTTCACACCCTTTGCAGAGAGCTCTTTG 92003838 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812 |||||||| ||||||||| | || | || |||||||| ||||| || || ||||||||| Sbjct 92000330 GTGACATGGGCAATCATGTATGTGAGCAGCGAATAGCTGGCAATATTGAAAGGCACTCCT 92000389 Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCA-TCACAGACATA 101871 | |||||||| | || || ||||||||||| || || || | ||| | ||| ||||| Sbjct 92000390 AGTCCCATATCTCCAGACCTCTGATACAGTTGGCAAGACAGTTCACCATTTACA-ACATA 92000448 Query 101872 AAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTG 101921 || || | | | || ||||| ||||| |||| || ||| |||| Sbjct 92000449 GAACTGGCAAAGAGCGTGGCAAGGTGGCAAAGCCATCAGAGAAATATCTG 92000498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361242341669012