Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq738 179 5e-40 seq621 113 5e-20 >seq738 Length=17221944 Score = 179 bits (198), Expect = 5e-40 Identities = 246/341 (72%), Gaps = 2/341 (1%) Strand=Plus/Plus Query 83055 GGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGC 83114 ||||||| |||||||||| || || | ||||| | || || ||||||| | || Sbjct 1696208 GGAGCAGCAGCTCGATGTCGTCCTGCAGTTTGATGGTCTCGAAGTGGCGGCTGTAGCGGC 1696267 Query 83115 GCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGC 83174 | | ||| ||| || | | || | |||||||||||||||||||| |||||||| | Sbjct 1696268 GGAAGGGGACGCCCTCGGGGTCTACGAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTCC 1696327 Query 83175 GGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGC 83234 ||||||| || |||||| ||| ||| |||| | ||| |||| | ||||||| Sbjct 1696328 GGCACACGGGGGACCAGATGATGTACTGCGGGTTGGTCATCAGCGCCGACGGGTCGTCGT 1696387 Query 83235 TAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC-CCTTGCACCGTTG 83293 || |||||| ||||||| ||||||||||| ||||| || || || | | ||||| Sbjct 1696388 GGGGGAACGGCAGCGCCTCTCTCAGGAAGGCGAACAGCGGGTGCGCTCCCTTC-CCGTTC 1696446 Query 83294 ACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGC 83353 ||||||||||||||||| | | ||||| || | ||||||||| || || || ||| | Sbjct 1696447 ACCTCGCACTTCTCGAACATGGTGAAGTTGGGTTTGAAGCCGTTGCCGGGCCGCACGAAC 1696506 Query 83354 TTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 | ||| || ||| |||||| | || |||||| ||||| Sbjct 1696507 TCCAGCGAGCGCAGGATCTCCTCGTTGGTGGCGTTCTCCTG 1696547 >seq621 Length=54019043 Score = 113 bits (124), Expect = 5e-20 Identities = 121/158 (77%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 83386 GTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCC 83445 |||| |||||| ||||||||||| || ||||| || ||||| ||||||| ||| | Sbjct 494079 GTTTACCTGGTAGCCGAACTGGTTGCAGGGGAAGCCCAGCACCACCAGCCGCCGCGGGTA 494020 Query 83446 TAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGA 83505 | | ||| ||||||| ||| | ||| ||||| |||| |||||| | |||||||| || Sbjct 494019 -ACGTGCC--TGCAGCTGGTTGAGCTGGGTGTAATCCCTCACCGTGGTGCCTCAGAGCGA 493963 Query 83506 CGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGA 83543 ||| ||||||||||| || | ||||| || || |||| Sbjct 493962 CGCCACGTTCTCGATCAGGACCACCCGCCCTCGGAAGA 493925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608781488760480