Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq253 95.1 8e-15 >seq253 Length=134823679 Score = 95.1 bits (104), Expect = 8e-15 Identities = 110/148 (74%), Gaps = 8/148 (5%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 ||||||||||||||||||||||| || || |||||||| ||||| | ||| || |||||| Sbjct 92003695 TATTCTGCTCCAAAATGCCTCCACTGAAAACCATAAACTGGTCCCAAGTCCCCCTCTTCT 92003754 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCT----AGATCCATTTGCATCCCAAAT 97517 || || || || | ||||| |||| || || ||||| ||||||||||| Sbjct 92003755 CTGGTGCAAAACCCCTGTTTATC----CAGGAACTCACGTGACCCATTGGCATCCCAAAT 92003810 Query 97518 GTGCACACCAGATGCTGCAAGCTCTTTG 97545 | |||||| ||| | ||||||||| Sbjct 92003811 CTTCACACCCTTTGCAGAGAGCTCTTTG 92003838 Score = 89.7 bits (98), Expect = 4e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||||||||| ||||| | || | || |||||||| ||||| || |||||||| ||| Sbjct 92000330 GTGACATGGGCAATCATGTATGTGAGCAGCGAATAGCTGGCAATATTGAAAGGCACTCCT 92000389 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCA-TCACACACATA 97235 ||||||||||| | || || ||||| | || || || || | ||| | ||| ||||| Sbjct 92000390 AGTCCCATATCTCCAGACCTCTGATACAGTTGGCAAGACAGTTCACCATTTACA-ACATA 92000448 Query 97236 AAACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271 ||||| | | | || || || ||||| ||||| Sbjct 92000449 GAACTGGCAAAGAGCGTGGCAAGGTGGCAAAGCCAT 92000484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346775496422840