Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq769 134 1e-26 seq756 98.7 9e-16 >seq769 Length=8760791 Score = 134 bits (148), Expect = 1e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || |||||||| ||||||||||| || || |||||| || Sbjct 5350546 CAGCACCAGGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGCCCGTC 5350487 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || ||||| |||| || | ||||||||||||||| ||||| |||||||| Sbjct 5350486 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 5350427 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | || || || || | |||| |||||| || ||| ||||| | ||| | || Sbjct 5350426 TTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 5350367 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| || || ||||| ||||||||| Sbjct 5350366 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 5350333 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || |||||||| || || |||||| ||| || ||||| || ||| Sbjct 5350986 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 5350927 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || | ||||||||||||||| |||||||| |||||| || || || Sbjct 5350926 GCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCCTCTTTGTCTTGGATCTTGGCCTTC 5350867 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| || || ||||| | ||| | || ||||| ||||| ||| Sbjct 5350866 ACGTTCTCGATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTT 5350807 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 5350806 TTCACGAAGATCTGCAT 5350790 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || |||||||| || |||||||| || || || || ||| Sbjct 5351458 CAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATC 5351399 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 |||||||| || |||||| |||| | | ||||||||||||||| ||||| ||||| || Sbjct 5351398 TTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCCTTATC 5351339 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | || || || || | || | ||| || || ||| ||||| | ||| | || Sbjct 5351338 TTGGATCTTAGCCTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGT 5351279 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || ||||| |||||||| Sbjct 5351278 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5351246 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||| || || |||||||| || || |||||| ||| Sbjct 5351686 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 5351627 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || ||||| |||| || | ||||||||||||||| ||||| || ||||| Sbjct 5351626 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTC 5351567 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | || || || || | ||| | |||||| || ||| ||||| | ||| | || Sbjct 5351566 TTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 5351507 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||| |||||||| Sbjct 5351506 CTTACCAGTGAGGGTCTTCACAAAGATCTGCAT 5351474 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| || || |||||| || |||||||| || ||| Sbjct 5350758 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCGAGCTGCTTGCCA 5350699 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | | ||||||||||||||| ||||| || || || || || || Sbjct 5350698 GCGAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTC 5350639 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| || || ||| ||||| | ||| | || ||||| |||| || Sbjct 5350638 ACATTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTC 5350579 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 5350578 TTCACAAAGATCTGCAT 5350562 >seq756 Length=11697260 Score = 98.7 bits (108), Expect = 9e-16 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || ||||| || ||| || |||||| ||| || | Sbjct 3815406 CAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGACAGTGTGCGCCCATCTTCCA 3815347 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 | ||||| |||||| |||| || | ||| || || || || |||||||||||||| | Sbjct 3815346 GTTGTTTGCCAGCGAAGATCAGCCTCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 3815287 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | || | |||||| || || ||||| | ||| | ||||| | Sbjct 3815286 TCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCAACCTCCAAGGTGATGGTTTTAC 3815227 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | |||| || || ||||| ||||||||| Sbjct 3815226 CTGTCAAGGTCTTCACAAAGATCTGCATG 3815198 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| || |||||| ||| || ||||| || ||| Sbjct 3815623 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGCCCATCTTCCAGCTGCTTCCCA 3815564 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | ||| || || ||||| || ||||||||||| || || || Sbjct 3815563 GCAAAGATCAACCTCTGTTGGTCAGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC 3815504 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| || || ||||| | ||| | |||||||| ||||| || Sbjct 3815503 ACGTTCTCAATGGTGTCACTGGGTTCAACCTCCAAGGTGATGGTTTTGCCAGTCAGGGTC 3815444 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 3815443 TTGACGAAGATCTGCAT 3815427 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || ||||| ||||| || |||||| ||| || ||||| || ||| Sbjct 3815167 GTGGACTCCTTCTGGATGTTATAATCAGACAATGTGCGCCCATCTTCCAGCTGCTTCCCA 3815108 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | |||||| || || || ||||||||||| || || || || Sbjct 3815107 GCAAAGATCAACCTCTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGGATCTTGGCCTTG 3815048 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| || || ||||| | || | || || |||||||| || Sbjct 3815047 ACATTCTCGATGGTGTCACTGGGTTCCACCTCCAATGTGATGGTCTTCCCGGTCAGTGTC 3814988 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 3814987 TTCACGAAGATCTGCAT 3814971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433819761936304