Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq450 120 6e-22 >seq450 Length=100941466 Score = 120 bits (132), Expect = 6e-22 Identities = 108/133 (81%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || ||||||||||||||| | || | ||||| |||||||||||||||| |||||||| Sbjct 72319815 GCTTTTTTTGGAGCTCAGATGAACGCATTTATTCATGTTATTATGTACATGTATTATGGA 72319874 Query 52117 ATGGCCGCTTGTGGTCCT-ATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || || ||||| ||| | ||||||||| ||||| ||||||||||| || | ||||| Sbjct 72319875 CTAGCTGCCTGTGGCCCTAAAGTTCAGAAA-TATCTGTGGTGGAAACGATACTTGACTAT 72319933 Query 52176 AATGCAGTTGGTA 52188 | |||| |||||| Sbjct 72319934 ACTGCAATTGGTA 72319946 Score = 104 bits (114), Expect = 4e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | |||| || || || || |||| ||||| || ||||| || || Sbjct 72320647 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 72320706 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 || |||||||| || ||| || ||| ||||| |||| | ||||| || ||||||| Sbjct 72320707 CCCTAAATGGATGCACTGGGGTGTCATTTTCTATGCTATCACCTTCATTTTCTTGTTTGG 72320766 Query 52305 TAACTTCTATTTTAGAACATACAAG 52329 ||||||||||| | | ||||| ||| Sbjct 72320767 TAACTTCTATTATCGGACATATAAG 72320791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923173581600480