Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq720 403 2e-107 seq765 109 6e-19 >seq720 Length=21326773 Score = 403 bits (446), Expect = 2e-107 Identities = 534/740 (72%), Gaps = 92/740 (12%) Strand=Plus/Minus Query 139470 CAACGGCTCCAACGGTCGTgcgcgcggggccgcgcgtgtgggagcgacgccgtccgcgcg 139529 ||||||| |||||| | ||| ||||||||||||||||||||||||||||||||||| | Sbjct 17644222 CAACGGCCCCAACGTTGTTGCTCGCGGGGCCGCGCGTGTGGGAGCGACGCCGTCCGCCTG 17644163 Query 139530 ccccacggcgcaggggggcgcggggg-ttgc--------------cccgggggcgccgct 139574 ||||||| |||||| |||||||| ||| ||||||| ||||||| Sbjct 17644162 CCCCACGTTACAGGGGA-CGCGGGGGGTTGATCCCGGGTTCGGATCCCGGGGTCGCCGCT 17644104 Query 139575 cccgtgttgctctgctgggggcgcggggccgcgcgcCGCATCTCCCGGGCGCCGCCGAG- 139633 ||||| || |||||||||| ||||||||||||||| || ||||| ||||||||| | Sbjct 17644103 CCCGT-TTATTCTGCTGGGGACGCGGGGCCGCGCGCTGCTCGTCCCGCGCGCCGCCGGGC 17644045 Query 139634 GCTGACAGAGGCGAACTCTTCGCGGCGGCAATGGCGGGTGCCGGCCGACCGCGGCCTGC- 139692 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 17644044 GCTGACAGAGGCGAACTCTTGGCGGCGGCAATGGCGGGTGCCGGCCGACCGCGGCCACCA 17643985 Query 139693 GGGCGAGGA-CCCCAGGGCGGATGGGGGCGAGAGGACCCCTCGCTGACGtttttttttGT 139751 ||| ||| ||||||||||| ||| ||| ||||||||||||||||||||||||| Sbjct 17643984 CAGCGGGGAGCCCCAGGGCGGGGTGGGCAGAGCGGACCCCTCGCTGACGTTTTTTTTT-A 17643926 Query 139752 TTGCCGTGGAGCCCCTTTCGGTCCTT---------------TCTCC--CGCGTCCGCCCC 139794 | | | ||||| ||||||| |||| ||||| | | || |||| Sbjct 17643925 TGGTCCCAGAGCCTCTTTCGGCCCTTTTTTTTTTCCCTCAATCTCCCTCCCCTCATCCCC 17643866 Query 139795 ANNNNNNNNNNNNNNNNNNNNC------------------CCCTGGGGCGGCTCCCCTAG 139836 | | ||||||||||||||| | | Sbjct 17643865 ACCGCCGGGGCGCCCCGATCCCCTCCCGCCTCCCTCCTCCCCCTGGGGCGGCTCCAATCG 17643806 Query 139837 CCCGCTGAAAGTCAGCGAGT-AAACAGCGGG----CGGAGGGAGCGCGGCGACAGTACCA 139891 |||||||||||||||||||| |||||||||| |||| ||||||||||||| | ||| Sbjct 17643805 CCCGCTGAAAGTCAGCGAGTAAAACAGCGGGCGGACGGACGGAGCGCGGCGACGGCGCCA 17643746 Query 139892 TC-AATACCTCCGATTAGGGTTAGACACAGCGGAGCCTTCCACCCGCCACGTGTGCCGGG 139950 || | || | |||||||||||||| ||||||||| || || ||||||||| ||| ||| Sbjct 17643745 TCGATTATCCCCGATTAGGGTTAGGAACAGCGGAG-CTGCCGCCCGCCACGCGTG-TGGG 17643688 Query 139951 GGAACCCCGCGTGGGGCTCTTGTAGCTTCCTCCGCCTACGCCCACCGCGCGCCTATTGGC 140010 ||||||||||| |||||||||||||| |||| || |||||||||||| || || | | | Sbjct 17643687 GGAACCCCGCGGGGGGCTCTTGTAGCCTCCT-CGTCTACGCCCACCGGGCTCCCAATAG- 17643630 Query 140011 CGGGCTGTACGCTGCCGCGTAGCTATTGGCGGCGGGGAGGAGAGCGAGCAGAGAGGGGCC 140070 ||| ||||||||| | ||||||||| | | ||| ||| Sbjct 17643629 ------------AGCC-----GCTATTGGCCTCCAGGAGGAGAGTGGGAGGAGCCGGGAT 17643587 Query 140071 GGT-GCGGGAGTTTGGAACTCCGCGGTCATTCATCTCCCGCCAC-----GCCCCATGCAC 140124 ||| ||||||||||||| | |||||||| || ||||||| | ||||| |||| Sbjct 17643586 GGTGGCGGGAGTTTGGAGCCCCGCGGTCGGTC-GGTCCCGCCGCGTGTTGCCCC--GCAC 17643530 Query 140125 GTGCCCCGCCCCTTCCTGTG 140144 |||||||||||||||| Sbjct 17643529 ACAGCCCGCCCCTTCCTGTG 17643510 Score = 399 bits (442), Expect = 2e-106 Identities = 532/740 (72%), Gaps = 92/740 (12%) Strand=Plus/Plus Query 1476 CACAGGAAGGGGCGGGGCACGTGCATGGGGC-----GTGGCGGGAGATGAATGACCGCGG 1530 |||||||||||||||| |||| ||||| | ||||||| || |||||||| Sbjct 17643510 CACAGGAAGGGGCGGGCTGTGTGC--GGGGCAACACGCGGCGGGACC-GACCGACCGCGG 17643566 Query 1531 AGTTCCAAACTCCCGC-ACCGGCCCCTCTCTGCTCGCTCTCCTCCCCGCCGCCAATAGCT 1589 | ||||||||||||| ||| ||| ||| | | ||||||||| | ||||||||| Sbjct 17643567 GGCTCCAAACTCCCGCCACCATCCCGGCTCCTCCCACTCTCCTCCTGGAGGCCAATAGC- 17643625 Query 1590 ACGCGGCAGCGTACAGCCCGGCCAATAGGCGCGCGGTGGGCGTAGGCGGAGGAAGCTACA 1649 ||| | | | || || |||||||||||| || |||| |||||| Sbjct 17643626 ----GGCT-------------CTATTGGGAGCCCGGTGGGCGTAGACG-AGGAGGCTACA 17643667 Query 1650 AGAGCCCCACGCGGGGTTCCCCCGGCACACGTGGCGGGTGGAAGGCTCCGCTGTGTCTAA 1709 |||||||| |||||||||||||| ||| ||||||||| || || ||||||||| |||| Sbjct 17643668 AGAGCCCCCCGCGGGGTTCCCCCA-CACGCGTGGCGGGCGGCAG-CTCCGCTGTTCCTAA 17643725 Query 1710 CCCTAATCGGAGGTATT-GATGGTACTGTCGCCGCGCTCCCTCCG----CCCGCTGTTT- 1763 |||||||||| | || | ||||| | ||||||||||||| |||| |||||||||| Sbjct 17643726 CCCTAATCGGGGATAATCGATGGCGCCGTCGCCGCGCTCCGTCCGTCCGCCCGCTGTTTT 17643785 Query 1764 ACTCGCTGACTTTCAGCGGGCTAGGGGAGCCGCCCCAG---------------------- 1801 ||||||||||||||||||||| | ||||||||||||| Sbjct 17643786 ACTCGCTGACTTTCAGCGGGCGATTGGAGCCGCCCCAGGGGGAGGAGGGAGGCGGGAGGG 17643845 Query 1802 ----GGGGCGCCNNNNNNNNNNNNNNNNNNNNCGGACGCGGGAG---------AAAGGAC 1848 |||||||| || | ||| ||||| | Sbjct 17643846 GATCGGGGCGCCCCGGCGGTGGGGATGAGGGGAGGGAGATTGAGGGAAAAAAAAAAGGGC 17643905 Query 1849 CGAAAGGGGCTCCACGGCAAACaaaaaaaaaCGTCAGCGAGGGGTCCTCTCGCCCCCATC 1908 |||||| ||||| | | | ||||||||||||||||||||||||| ||| ||| | Sbjct 17643906 CGAAAGAGGCTCTGGGACCAT-AAAAAAAAACGTCAGCGAGGGGTCCGCTCTGCCCACCC 17643964 Query 1909 CGCCCTGGGG-TCCTCGCCC-GCAGGCCGCGGTCGGCCGGCACCCGCCATTGCCGCCGCG 1966 |||||||||| ||| ||| | ||||||||||||||||||||||||||||||||||| Sbjct 17643965 CGCCCTGGGGCTCCCCGCTGTGGTGGCCGCGGTCGGCCGGCACCCGCCATTGCCGCCGCC 17644024 Query 1967 AAGAGTTCGCCTCTGTCAGC-CTCGGCGGCGCCCGGGAGATGCGgcgcgcggccccgcgc 2025 |||||||||||||||||||| | ||||||||| ||||| || ||||||||||||||| Sbjct 17644025 AAGAGTTCGCCTCTGTCAGCGCCCGGCGGCGCGCGGGACGAGCAGCGCGCGGCCCCGCGT 17644084 Query 2026 ccccagcagagcaacacgggagcggcgcccccggg--------------gcaa-cccccg 2070 |||||||||| || |||||||||||| ||||||| ||| |||||| Sbjct 17644085 CCCCAGCAGAATAA-ACGGGAGCGGCGACCCCGGGATCCGAACCCGGGATCAACCCCCCG 17644143 Query 2071 cgcccccctgcgccgtggggcgcgcggacggcgtcgctcccacacgcgcggccccgcgcg 2130 || |||||| |||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 17644144 CG-TCCCCTGTAACGTGGGGCAGGCGGACGGCGTCGCTCCCACACGCGCGGCCCCGCGAG 17644202 Query 2131 cACGACCGTTGGAGCCGTTG 2150 || | |||||| ||||||| Sbjct 17644203 CAACAACGTTGGGGCCGTTG 17644222 >seq765 Length=9547476 Score = 109 bits (120), Expect = 6e-19 Identities = 198/290 (68%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 153668 TTTTGTCTGAGAATTGGGGGTTTGGAGGCCAGCTTTCATAAAGGGCAGGAGGAGCTGTTA 153727 || || ||||| | ||||| |||||| | ||| || ||||||||||||||||| Sbjct 4512864 TTCTGCCTGAGGCTCGGGGGGCTGGAGGGCTCCTTCTATGAAGGGCAGGAGGAGCTGAAG 4512805 Query 153728 GAGTATTGTGAAGCACTTTATTTACCACAACCTGTTAAGATGGAAATAGTAGGCATTGTA 153787 ||||| ||||| | || || | | || | |||||| | || |||| || Sbjct 4512804 GAGTACTGTGAGGTGCTCTACCTGAAGAAGCCCACCAGGATGGAGGTGGTGGGCACAGTG 4512745 Query 153788 GACGATGTGCCATGTCTGGCAACGGGGATGCAATTACTCATTCTTGTTGCCGAGGGGGGA 153847 || || ||||| || ||||| |||||| ||| | |||| |||||||| ||| Sbjct 4512744 GATGACGTGCCCTGCCTGGCCACGGGGCAGCAGCTCGTCATCCTTGTTGCTGAGACCAAG 4512685 Query 153848 GAGGTATATGCCTATGAAGAAGATACTCTGCATAAGTTAGCCACGAGTTTTTCCGAATTC 153907 ||||| ||||| ||||| || ||||| ||||| ||| | |||| || | | | || ||| Sbjct 4512684 GAGGTGTATGCTTATGAGGAGGATACGCTGCACAAGGTTGCCAAGAATATGACAGAGTTC 4512625 Query 153908 CTTGAAATTGGAGTGAAATCTTTAGGGAGGGAGGTTTACCATTGTGGAGA 153957 | || ||||| || | |||||| || || ||||| || ||||| Sbjct 4512624 ATGGAGATTGGGCTGCAGAACCTAGGGAAAGAAGTCTACCACTGCGGAGA 4512575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569054487919680