Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq769 114 8e-21 seq756 96.9 2e-15 >seq769 Length=8760791 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||||||||| | ||| |||||||| ||||||||||| ||||| || |||| Sbjct 5350546 CAGCACCAGGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGCCCGTC 5350487 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||||||||| || || || |||| |||||| ||| || | || |||||||| Sbjct 5350486 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 5350427 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | || | || | | || || || | |||||||| Sbjct 5350426 TTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 5350367 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || ||||||||||||||||| Sbjct 5350366 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5350334 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||||||||| | || |||||||| ||||||||||| ||||| |||| | || Sbjct 5351458 CAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATC 5351399 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 || | ||||||||| ||||| || | || |||||| ||| || | || ||||| || Sbjct 5351398 TTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCCTTATC 5351339 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | || | |||| | | || || || | |||||||| Sbjct 5351338 TTGGATCTTAGCCTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGT 5351279 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || || || |||||||||||||||||| Sbjct 5351278 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATC 5351245 Score = 105 bits (116), Expect = 4e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||||||||| ||||| || | || |||| ||||||||| ||||| Sbjct 5350980 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAG 5350921 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| |||||| ||| || | || ||| ||||| ||||| ||| | | Sbjct 5350920 ATCAGCCTCTGCTGATCGGGAGGAATGCCCTCTTTGTCTTGGATCTTGGCCTTCACGTTC 5350861 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | | ||| || || | |||||||| ||||| || || |||||||| Sbjct 5350860 TCGATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACG 5350801 Query 34379 AAGATCTGCATCGCTC 34394 |||||||||||| ||| Sbjct 5350800 AAGATCTGCATCCCTC 5350785 Score = 98.7 bits (108), Expect = 6e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||||||||| | || || ||||| ||||||||||| ||||| || | || Sbjct 5351686 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 5351627 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||||||||| || || || |||| |||||| ||| || | || || ||||| Sbjct 5351626 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTC 5351567 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | || | || | | || || || | |||||||| Sbjct 5351566 TTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 5351507 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || ||||| || |||||||||||||||||| Sbjct 5351506 CTTACCAGTGAGGGTCTTCACAAAGATCTGCATC 5351473 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | |||||| || || | || || ||||| ||||||||||| ||| Sbjct 5350788 CCTCCCCTCAGACGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 5350729 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | ||||||||| ||||| || | || |||||| ||| || Sbjct 5350728 AGGGTGCGCCCGTCTTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCGGGAGGA 5350669 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || || || || ||||| ||| | || | || | |||| | | || || Sbjct 5350668 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCAACC 5350609 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 || | |||||||| ||||| || | || |||||||||||||||||| ||| Sbjct 5350608 TCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATCCCTC 5350557 >seq756 Length=11697260 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||| ||||||||||| || | || |||| || ||||| ||||| Sbjct 3815389 TCCTTCTGGATGTTATAGTCGGACAGTGTGCGCCCATCTTCCAGTTGTTTGCCAGCGAAG 3815330 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| ||| ||||| ||| | || ||||||||| ||||| ||| | | Sbjct 3815329 ATCAGCCTCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 3815270 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | ||| || |||| ||||||||||| || || | || |||||| Sbjct 3815269 TCAATGGTGTCGCTGGGTTCAACCTCCAAGGTGATGGTTTTACCTGTCAAGGTCTTCACA 3815210 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 3815209 AAGATCTGCAT 3815199 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | || | |||||| || || | || || ||||| ||||||||||||||| Sbjct 3815653 CCGCCCCTGAGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3815594 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| |||||| || || || || | || ||| ||||| || Sbjct 3815593 AGTGTGCGCCCATCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGTTGGTCAGGAGGG 3815534 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | || | || | | ||| || Sbjct 3815533 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAACC 3815474 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 |||| |||||||||||||| || || || || || |||||||||||| ||| Sbjct 3815473 TCCAAGGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCATCCCTC 3815422 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | |||||| || || | || || ||||| ||||| || || ||| Sbjct 3815197 CCGCCCCGCAGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTATAATCAGAC 3815138 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | || | || |||| |||||| || || || || | || ||||||||| || Sbjct 3815137 AATGTGCGCCCATCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTGGG 3815078 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||| || ||||| ||| | || | || | || | | ||| || Sbjct 3815077 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACC 3815018 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| |||||||| || ||||| || || ||||| |||||||||||| Sbjct 3815017 TCCAATGTGATGGTCTTCCCGGTCAGTGTCTTCACGAAGATCTGCATC 3814970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323064077870720