Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_002641.1 Length=159160 Score E Sequences producing significant alignments: (Bits) Value seq725 268 9e-67 >seq725 Length=18483700 Score = 268 bits (296), Expect = 9e-67 Identities = 310/421 (74%), Gaps = 1/421 (0%) Strand=Plus/Minus Query 125093 CCCGTGCCGTGCTTACCCATCCGCCGTGCTCCCGCAACCACTCGCCCTGCTCTTCGGCCA 125152 ||||| || ||| |||||||||||||||||| || |||||| |||||||| ||||||| Sbjct 7782844 CCCGTCCCC-GCTCACCCATCCGCCGTGCTCCTCCATCCACTCTCCCTGCTCCTCGGCCA 7782786 Query 125153 GGTACGCGGCCAGCGCTGCGGCCAAGCGGCTTGGCCCTTCCTCACAGCCGTTTTCGTACA 125212 ||||||||| |||||| ||||||| |||||| ||||||||||| |||||| | ||| || Sbjct 7782785 GGTACGCGGTCAGCGCGGCGGCCAGGCGGCTCGGCCCTTCCTCGCAGCCGCTCTCGGTCA 7782726 Query 125213 GCGCCGTTGCCAGCGAGCCGCCGAGGACTATGGTCGCCAGGCATCGACCCCAGTTGAAGC 125272 |||| | |||| || |||| ||| || | | |||||| || |||||||| | || Sbjct 7782725 GCGCTGCCGCCAACGTGCCGGCGAACACCACGAGCGCCAGCAGCCGGCCCCAGTTCAGGC 7782666 Query 125273 CGCTTCCGGAGTTCAATTCAGACACCACACTTTGCAGCGCCGACAACGCTGCCTGCGTGC 125332 ||| ||| | || | | | |||| | ||||| || | ||| || ||| Sbjct 7782665 CGCCGTCGGCCTCCAGCTGCGCCGCCACCTTCCGCAGCAGCGCCGCCGCCTCCCGCGGCT 7782606 Query 125333 CGCCGCTCGCTAACGGCGCGCAGGAGCGAAAGAAGGGCCTCTCTCGCCGCTCCAGCTCGG 125392 || | | ||| | ||| |||||||| || |||||||||| ||| || ||||||||||||| Sbjct 7782605 CGGCCCGCGCCAGCGGAGCGCAGGATCGGAAGAAGGGCCGCTCCCGTCGCTCCAGCTCGG 7782546 Query 125393 CCGCCGCTCGCCGNNNNNNNNNNNNNGTAGGACTCGGCGGCGGCCCTTCCTTGCCGCAGC 125452 ||||||| ||||| || | || || ||| || | || |||| | Sbjct 7782545 CCGCCGCCCGCCGCAGCTCGGCCGCCGTGGCGCTGGGAGGCAGCGCGGCCCCGCCGGCCC 7782486 Query 125453 AGTGCTGGAAGTAATCCTCCAGCAGCAACGCCGTTTCTTCCTTCAGGGAGTCAGCCATGG 125512 |||||||||||||||||||||||||| |||||| || |||||||| ||| | | ||||| Sbjct 7782485 GGTGCTGGAAGTAATCCTCCAGCAGCAGCGCCGTCTCCTCCTTCAGAGAGCCCGGCATGG 7782426 Query 125513 C 125513 | Sbjct 7782425 C 7782425 Score = 262 bits (290), Expect = 4e-65 Identities = 309/421 (73%), Gaps = 1/421 (0%) Strand=Plus/Plus Query 157083 GCCATGGCTGACTCCCTGAAGGAAGAAACGGCGTTGCTGCTGGAGGATTACTTCCAGCAC 157142 |||||| | | ||| |||||||| || |||||| |||||||||||||||||||||||||| Sbjct 7782425 GCCATGCCGGGCTCTCTGAAGGAGGAGACGGCGCTGCTGCTGGAGGATTACTTCCAGCAC 7782484 Query 157143 TGCTGCGGCAAGGAAGGGCCGCCGCCGAGTCCTACGGCGGCAGAGCTGCGGCGAGCNNNN 157202 | |||| || | || ||| || || | |||||||| ||||||||||| || Sbjct 7782485 CGGGCCGGCGGGGCCGCGCTGCCTCCCAGCGCCACGGCGGCCGAGCTGCGGCGGGCGGCG 7782544 Query 157203 NNNNNNNNNGAGCGGCGAGAGAGGCCCTTCTTTCGCTCCTGCGCGCCGTTAGCGAGCGGC 157262 ||||| || ||| |||||||||| || |||||||| ||| | ||| | | | Sbjct 7782545 GCCGAGCTGGAGCGACGGGAGCGGCCCTTCTTCCGATCCTGCGCTCCGCTGGCGCGGGCC 7782604 Query 157263 GGCACGCAGGCAGCGTTGTCGGCGCTGCAAAGTGTGGTGTCTGAATTGAACTCCGGAAGC 157322 | ||| || ||| | || ||||| | |||| | | | || | ||| || Sbjct 7782605 GAGCCGCGGGAGGCGGCGGCGCTGCTGCGGAAGGTGGCGGCGCAGCTGGAGGCCGACGGC 7782664 Query 157323 GGCTTCAACTGGGGTCGATGCCTGGCGACCATAGTCCTCGGCGGCTCGCTGGCAACGGCG 157382 ||| | |||||||| || |||||| | | || ||| |||| || |||| | ||| Sbjct 7782665 GGCCTGAACTGGGGCCGGCTGCTGGCGCTCGTGGTGTTCGCCGGCACGTTGGCGGCAGCG 7782724 Query 157383 CTGTACGAAAACGGCTGTGAGGAAGGGCCAAGCCGCTTGGCCGCAGCGCTGGCCGCGTAC 157442 ||| ||| | |||||| ||||||||||| |||||| ||||||| |||||| |||||||| Sbjct 7782725 CTGACCGAGAGCGGCTGCGAGGAAGGGCCGAGCCGCCTGGCCGCCGCGCTGACCGCGTAC 7782784 Query 157443 CTGGCCGAAGAGCAGGGCGAGTGGTTGCGGGAGCACGGCGGATGGGTAAGCACGGCACGG 157502 |||||||| |||||||| |||||| || |||||||||||||||||| ||| || |||| Sbjct 7782785 CTGGCCGAGGAGCAGGGAGAGTGGATGGAGGAGCACGGCGGATGGGTGAGC-GGGGACGG 7782843 Query 157503 G 157503 | Sbjct 7782844 G 7782844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509171194022400