Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq253 96.9 3e-15 seq450 95.1 1e-14 >seq253 Length=134823679 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 16245 CACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTA 16304 |||||| || | | || || || || || | || || || || || | || ||||| | Sbjct 117709171 CACAATACATTACCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTTAATCCGGGCATCA 117709112 Query 16305 GTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAA 16364 | || | || || | |||||| || || ||||||||||| |||||||| || ||||||| Sbjct 117709111 GGCCCCTCTTCTTCAGCCAAAAAATCGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAA 117709052 Query 16365 CTGCGGCAAATGCAACCAATCGCTCACC 16392 |||| || || ||||||| || |||||| Sbjct 117709051 CTGCAGCGAAGGCAACCACTCTCTCACC 117709024 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 ||||||| |||||||| || || || || || | | || ||| || | | || Sbjct 117712381 AAAAATCTGCATCTAGAGTGAAAACGTTGTCCATTGTTTCTGCCATCACAGCAAAACGTT 117712322 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 |||| || ||| | ||| ||||||||||| ||||||||||| | |||||||| |||| Sbjct 117712321 GATACTCTGAAACCCGCTTCTCAAAGAAATTGGTTTTTCCTTCCAGAGAAATATTCTCCA 117712262 Query 16008 TAAAATCAAAAGGATTTTTTG 16028 | |||||||||||||||| || Sbjct 117712261 TGAAATCAAAAGGATTTTCTG 117712241 >seq450 Length=100941466 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || ||||| || | ||| || ||||| || || || ||||||| |||| ||| || Sbjct 88063152 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAACCTCTTTTCTTC 88063093 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||| || | ||||| || ||||||||||| || ||||| ||||| |||||||| Sbjct 88063092 AGCCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGCT 88063033 Query 16379 AC 16380 || Sbjct 88063032 AC 88063031 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985 || ||||| ||| ||| | |||||||||| |||| ||| ||||||||||| || || Sbjct 88064414 TTCGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTG 88064355 Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023 ||||| | || || || ||||| |||||||||||||| Sbjct 88064354 CCTTCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 88064317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462500367823200