Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq725 334 5e-87 seq808 114 9e-21 >seq725 Length=18483700 Score = 334 bits (370), Expect = 5e-87 Identities = 730/1078 (68%), Gaps = 14/1078 (1%) Strand=Plus/Minus Query 107543 GCGAGGGGACCAGGAAGCAGTG--GTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAA 107600 |||||||||| |||| || ||| | || ||||| || ||||||||| |||| ||| Sbjct 4488653 GCGAGGGGACGAGGAGGCGGTGAGGGCC--GCCCTGCTGAGCAACCTGGAGGTGAGGAAC 4488596 Query 107601 AAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTC 107660 ||| || || || || | | ||||| ||||| || | ||||| | ||||| Sbjct 4488595 AAGAGGGAACCCCTGACCCCCGAGGAGTACCTGAACATGACGAAGGACTGCGGCAGCTTC 4488536 Query 107661 AAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATT 107720 |||| || | ||| ||||||| ||||| | || ||| ||||||||||| Sbjct 4488535 AAGGAGAGCCGGCGCTACATCGAGTTCCCGCTGAGCGAGGAGGAGGCCGACTTCCCCATC 4488476 Query 107721 GCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTG 107780 || ||||| ||||| |||| | ||||| || | || || ||||| ||||| | | Sbjct 4488475 GCTTACTCCATGGTCATCCACCACAAGATCGAGATGTTCGAGCGGCTCCTGCGCTCTCTC 4488416 Query 107781 TATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGA-GACTTTCAA 107839 || ||||| |||||| | ||||| ||||||||||| | ||| | || | | ||| || Sbjct 4488415 TACGCCCCGCAGAACGTCTACTGCGTCCACGTGGACGGCAAGGCTCCCGCCGCCTTCCAG 4488356 Query 107840 AGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGT 107899 ||| || | |||||| ||||||||||||| |||||| ||||||| ||| Sbjct 4488355 CGAGCCGTGCG-GGCCATCGCCGCCTGCTTCCCCAACGTCTTCGTGGCCAGCCGCCTGGA 4488297 Query 107900 CCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTT 107959 ||||| || ||||| |||||| | |||| || ||||| ||||| ||| ||| | Sbjct 4488296 GAGCGTGGTGTACGCCTCGTGGTCCCGGCTGCAGGCCGACCTCAACTGCATGCGGGACCT 4488237 Query 107960 GCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCAT 108019 ||| |||||| | ||||| ||| ||| | || || || ||||| || ||||||||||| Sbjct 4488236 GCTGCAGAGCCCCGTGCCCTGGCGCTACGTCCTCAACACCTGCGGCACCGACTTCCCCAT 4488177 Query 108020 AAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGA 108079 |||||||| || |||| ||||| || || | || || |||| ||||||| ||||| Sbjct 4488176 CAAGACCAACGCGGAGACGGTCCGCGCGCTGCGGGTGCTGCAGGGGCAGAACAGCATGGA 4488117 Query 108080 GTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACC-GCTATGAGGTGACAG 108138 ||| ||| || | | | ||| | | |||||||| |||| || ||| || | Sbjct 4488116 GTCGGAGAAGCCCACGGCTTACAAGCAGGAGCGCTGGAAGTACCGGCACCGAGTGGAGCG 4488057 Query 108139 ACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCA 108198 || | |||| || || | |||| || || || | |||||||||| Sbjct 4488056 GTTCA-TCTACCGCACGGCCACGGAGAAGCCGCCGCCGCCGCTGCGCTCGCCCATGTTCA 4487998 Query 108199 CAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTA 108258 | || | || || | | |||| | || | ||| || | || || | || |||| Sbjct 4487997 CGGGCAGCGCGTACATCGCGGCCACGCGGGGCTTCGTGCGGCACGTGCTGGAGGACCCCG 4487938 Query 108259 AATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGG 108318 | | || | | | || |||| ||| ||||| || ||||||||||| ||| | |||| Sbjct 4487937 AGGCGCAGCGGTTCCTCGAGTGGGCCAAGGACACGTACAGCCCCGACGAGCACGTGTGGG 4487878 Query 108319 CCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACA 108378 ||||||| | || || || | |||| ||| | || || | || ||||| |||| Sbjct 4487877 CCACCCTGAACCGCGCGCCCGGCGTGCCCGGCGCCGTGCCCCACAACGACAAGTTCCACA 4487818 Query 108379 TCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAG-GGAGATGTC 108437 | || ||||||| || | || | || |||||||||||||||| ||| || || Sbjct 4487817 TGTCCGACATGAACGCGCTGCCCCGCCTGGTCAAGTGGCAGTACC-TGAGCGGCGACACG 4487759 Query 108438 AGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTAC 108497 ||| || ||||| || | |||||| | || | | | | | | ||||||| ||| Sbjct 4487758 AGCCGCGGAGCGCCCTACCCGCCCTGCACCGGCCGCTTCCAGCGCGGCGTCTGCATCTAC 4487699 Query 108498 GGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 |||||||||||| || ||||| || || | || || |||||||| |||||||| ||| Sbjct 4487698 GGGGCCGGGGACGTGGCGTGGATGCTGGAGCAGCACCATCTCTTGGCCAACAAGTTCGAC 4487639 Query 108558 -CCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAG-TACCTACGTCATAAGGC 108613 |||| ||||| ||| || | | ||||| | | |||| |||| || || ||||| Sbjct 4487638 TCCGA-AGTGGACGATGCCGCCATCCAGTGTCTCG-AGAGCCACCTGCGCCACAAGGC 4487583 >seq808 Length=67000979 Score = 114 bits (126), Expect = 9e-21 Identities = 228/331 (69%), Gaps = 10/331 (3%) Strand=Plus/Plus Query 108231 TTTGTCCAACATGTCTTAGACAACC-CTAAATCCCAAAGACTGGTTGAATGGGTCAAAGA 108289 ||||| || |||| ||||| ||| | |||||| || | | |||| |||| ||||| Sbjct 33630041 TTTGTAGAATATGTATTAGAAAACAGCAAAATCCTCAA-ATTTATTGAGTGGGCAAAAGA 33630099 Query 108290 CACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGA-TGCCTG 108348 ||| || |||||||| || |||| ||||| || ||||| | ||| || | || | Sbjct 33630100 CACTTACAGCCCCGATGAGTACCTATGGGCAACAATTCAGAGAA-TCCCTGACGTCCCAG 33630158 Query 108349 GCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGC 108405 | ||||| || || || |||||| | | || ||||||| ||| | |||||| Sbjct 33630159 GTGCTGTTTCTTCTAGTGAC---AAGTATGATGTTTCTGACATGAATGCACTGGCCAGGT 33630215 Query 108406 TCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCT 108465 | ||||||||||||||| || |||||||| | || ||||| || |||| ||| Sbjct 33630216 TTGTCAAGTGGCAGTACTTTGAAGGAGATGTGTCTAAAGGTGCGCCCTACCCACCATGCA 33630275 Query 108466 CTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCC 108525 |||| | ||| | | |||| | | |||| || |||||| ||||||| || | Sbjct 33630276 ATGGAGTTCATGTTCGATCTGTCTGTGTGTTTGGGGTAGGAGACCTGAACTGGATGCTGC 33630335 Query 108526 AGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 ||||| ||| |||| || || |||||||| Sbjct 33630336 GAAACCACCACTTCTTTGCTAATAAGTTTGA 33630366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348260260013688