Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq769 111 1e-19 seq1 107 2e-18 seq756 100 3e-16 >seq769 Length=8760791 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||||||||| || || || ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 5350330 AAACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCC 5350389 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 |||| |||| | || || | || |||||||||||| | || ||||| Sbjct 5350390 CAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCCGA 5350449 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||| | || || || |||||||| ||| |||||||| || || || || Sbjct 5350450 TCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTA 5350509 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| ||||| || ||||| || ||||| || | || ||||| || Sbjct 5350510 CAACATTCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTCAGGGGAGG 5350560 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || ||||| ||||| || |||||| | || |||||||| Sbjct 5350790 ATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAACCCAGT 5350849 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||||| || ||| | || ||||| ||| Sbjct 5350850 GACACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAAGAGGGCATTCCTCCCGATCAG 5350909 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||||||||| ||| ||||||| || || || || ||| Sbjct 5350910 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 5350969 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || ||||| || || || ||||| || || | || ||||| || Sbjct 5350970 ATCCAGAAAGAGTCCACCCTGCATCTTGTGCTGCGCCTCAGGGGAGG 5351016 >seq1 Length=175656249 Score = 107 bits (118), Expect = 2e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 ||||||| | |||| || ||||| || ||||| || || |||| || || | ||| | Sbjct 174295741 TTTCAACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCAC 174295800 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 || ||| ||||| ||||||||||| || || || | ||| || || | |||| |||| Sbjct 174295801 GCTGCTCTTCTTTCCCGGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAGGTGCC 174295860 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 ||||||| ||||| | |||||| || || ||||||| || Sbjct 174295861 ACGGCTCCAGGTAGATGGCAAAAGCCCCGGGTCTCTGAT 174295899 >seq756 Length=11697260 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||||| ||||| |||||| | || |||||||| Sbjct 3815198 CATGCAGATCTTTGTGAAGACCTTGACAGGTAAAACCATCACCTTGGAGGTTGAACCCAG 3815257 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | || || | || ||||||||| ||| | || || ||||| Sbjct 3815258 CGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 3815317 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || |||||||||||||| ||||||| || || ||| ||||| Sbjct 3815318 ACAGAGGCTGATCTTCGCTGGCAAACAACTGGAAGATGGGCGCACACTGTCCGACTATAA 3815377 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || ||||| || || | || ||||| || Sbjct 3815378 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCCTCAGGGGAGG 3815425 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| ||||| || || || ||||| | || || ||||| Sbjct 3814968 AAGATGCAGATCTTCGTGAAGACACTGACCGGGAAGACCATCACATTGGAGGTGGAACCC 3815027 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | ||||| | || ||| ||||| ||| | || || ||| Sbjct 3815028 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCACCTGAC 3815087 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | | || || ||||| || ||| ||||||| || || |||||| Sbjct 3815088 CAGCAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGCACATTGTCTGATTAT 3815147 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || || || || ||||| || || | ||| ||||||| Sbjct 3815148 AACATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTGCGGGGCGG 3815197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445755188975040