Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq253 120 4e-22 seq450 111 2e-19 >seq253 Length=134823679 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || || || || | ||||||||| ||||| | ||| | Sbjct 117709159 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTTAATCCGGGCATCAGGCCCCTCTTCT 117709100 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||| || | ||| ||||| || ||||||||||| ||||| |||||||| |||| Sbjct 117709099 TCAGCCAAAAAATCGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCGAAGG 117709040 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | |||||| || Sbjct 117709039 CAACCACTCTCTCACC 117709024 >seq450 Length=100941466 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||||||| || | || |||||||| |||||||| ||||||| || | || | Sbjct 88063154 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAACCTCTTTTCT 88063095 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||| ||||| || || || || ||||||||||||||||| ||||| ||||| | Sbjct 88063094 TCAGCCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATG 88063035 Query 33724 C 33724 | Sbjct 88063034 C 88063034 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| |||||||| | || |||||||| || || || || || ||||| || || ||| Sbjct 88064411 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 88064352 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 |||| || || || |||||||||||||| ||||| Sbjct 88064351 TCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 88064317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629801760087360