Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq450 129 5e-25 seq253 107 2e-18 >seq450 Length=100941466 Score = 129 bits (142), Expect = 5e-25 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||||||| || || ||||||||||| || | ||| ||||| || |||| ||| || Sbjct 88063152 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAACCTCTTTTCTTC 88063093 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||||| || | ||||| || ||||||||||| ||||| ||||| |||||||||||| Sbjct 88063092 AGCCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGCT 88063033 Query 11774 ACTACTCTTTCTCC 11787 ||||| | |||||| Sbjct 88063032 ACTACACGTTCTCC 88063019 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 11882 TCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTT 11941 ||| || |||| | | ||||| || || | | ||| |||||||||||||| |||||| Sbjct 88061995 TCTTTAGAATCTTTAATGTATGTGTCAATGAGAAGACTGTACATTTCTGAATGTATATTT 88061936 Query 11942 TCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 ||||| || || || || ||||||||||| ||||| |||| Sbjct 88061935 TCCATGGCAATCTGGAAGCCATAGAAACAACGTGCTTCTG 88061896 >seq253 Length=134823679 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| || || |||||||||||||||| || | || || Sbjct 117709157 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTTAATCCGGGCATCAGGCCCCTCTTCTTC 117709098 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||||| || |||||||||||||| |||||||| || || || || || || || || Sbjct 117709097 AGCCAAAAAATCGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCGAAGGCA 117709038 Query 11774 ACTACTCTTTCTCC 11787 || ||||| || || Sbjct 117709037 ACCACTCTCTCACC 117709024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468513016601280