Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1 116 5e-21 seq450 111 2e-19 >seq1 Length=175656249 Score = 116 bits (128), Expect = 5e-21 Identities = 94/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||| ||||||||||| |||| ||||||||||| || ||||| Sbjct 31222514 CCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGTAATGTATATGCAGTGAGTCCAAGA 31222573 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAA 9593 || || ||||| || || ||||| ||||||| ||||| ||||||||||||| Sbjct 31222574 AATACAGCAGTCGTAAGAATGAAGGCTTGCAAGACGACGGACACATCATAGAAA 31222627 Score = 109 bits (120), Expect = 7e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| || |||||| || | |||| | ||| ||| | | ||||||||||||||| || Sbjct 31220989 TTACTTTTTATTAAATGCCTCCAGCAAACGTAGCAGGTTGATGAACAGATTGATGATGTC 31221048 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 || ||| | |||||| | || | | || || || || |||||||| || || || | Sbjct 31221049 CAGGTAAAGATTGATTGCAGCCAGTATGTACTCCTCGGGGGAGAGCTTGTGCATCAGCAA 31221108 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 ||| |||||||| ||||| ||||| ||||| | ||| || ||| ||||| | |||| Sbjct 31221109 GTGAGTGTCATAAATAATAAATCCACAGAAGAGAAGAGCTCCAGCAGCAGCAAACACCAA 31221168 Query 9407 CTCCACTGTTTCACT 9421 ||||| | |||| || Sbjct 31221169 CTCCATTATTTCGCT 31221183 >seq450 Length=100941466 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | || || ||||| |||||||| ||||||| || | || | Sbjct 88063154 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAACCTCTTTTCT 88063095 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| ||||| ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 88063094 TCAGCCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATG 88063035 Query 36300 C 36300 | Sbjct 88063034 C 88063034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658156246954080