Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq253 129 8e-25 seq450 120 4e-22 seq1 84.2 3e-11 >seq253 Length=134823679 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| ||||| || || | ||||||||| ||||| | ||| | Sbjct 117709159 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTTAATCCGGGCATCAGGCCCCTCTTCT 117709100 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||||| || | |||||||| || ||||||||||| ||||| ||||| || |||| Sbjct 117709099 TCAGCCAAAAAATCGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCGAAGG 117709040 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | |||||| || Sbjct 117709039 CAACCACTCTCTCACC 117709024 >seq450 Length=100941466 Score = 120 bits (132), Expect = 4e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||||| || || || || ||||| |||||||| ||||||| || | || | Sbjct 88063154 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAACCTCTTTTCT 88063095 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||||| ||||| ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 88063094 TCAGCCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATG 88063035 Query 50102 CAAC 50105 | || Sbjct 88063034 CTAC 88063031 >seq1 Length=175656249 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 79668 TATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTT 79727 |||||| ||||||||||| || || || ||||| || || || || ||||| ||||| | Sbjct 174294506 TATTTCTGTGCAGAGGTTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTGCTCTTCCT 174294565 Query 79728 GTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAAT 79787 ||| || | || || || || ||| | || || ||||| || |||| ||||| || || Sbjct 174294566 GTTGCAAGAGTCTTTGTACAGCATGTAAGGTGTGCCAGTCTCTGTCTGCGATTCAATGAT 174294625 Query 79788 CGCTTTCCAGA 79798 || | ||||| Sbjct 174294626 TGCGTACCAGA 174294636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718250735539680