Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq253 111 2e-19 seq450 105 6e-18 >seq253 Length=134823679 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || || || |||||||| ||||||| || | || | Sbjct 117709159 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTTAATCCGGGCATCAGGCCCCTCTTCT 117709100 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | |||||| || ||||| ||||| || |||||||| || || ||||||||||| || | Sbjct 117709099 TCAGCCAAAAAATCGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCGAAGG 117709040 Query 13802 C 13802 | Sbjct 117709039 C 117709039 >seq450 Length=100941466 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||||||||| || || || || ||||| || | ||| ||||| || |||| ||| | Sbjct 88063154 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAACCTCTTTTCT 88063095 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | |||||| || | || || || || |||||||| ||||| || ||||| ||||| | Sbjct 88063094 TCAGCCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATG 88063035 Query 13802 CTATTAGTCGTTCTCC 13817 ||| || |||||||| Sbjct 88063034 CTACTACACGTTCTCC 88063019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478576763491680