Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq756 107 1e-18 seq769 98.7 7e-16 >seq756 Length=11697260 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| || || || ||||| || ||| || | | | | ||||| | ||| Sbjct 3815402 ATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGACAGTGTGCGCCCATCTTCCAGTTG 3815343 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||||||| | |||| | |||||||| || || || || ||||| || || Sbjct 3815342 TTTGCCAGCGAAGATCAGCCTCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 3815283 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || | || ||||| ||||| ||| || || ||||| |||||||||||||| Sbjct 3815282 GGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCAACCTCCAAGGTGATGGTTTTACCTGT 3815223 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| Sbjct 3815222 CAAGGTCTTCACAAAGATCTGCAT 3815199 >seq769 Length=8760791 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| || || || |||||||| || || | | | ||||||| | || Sbjct 5350765 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCGAGCTG 5350706 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||||||| | ||||| | || || ||| ||||| |||||||| || || || Sbjct 5350705 CTTGCCAGCGAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCTTTATCCTGGATCTT 5350646 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| | || ||||||||||| || || || | ||| ||||| || || || Sbjct 5350645 GGCCTTCACATTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGT 5350586 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| Sbjct 5350585 CAAGGTCTTCACAAAGATCTGCAT 5350562 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || || || |||||||| || || | | | | ||||| | || Sbjct 5351676 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGC 5351617 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 |||||||| | |||| | || || ||| ||||| ||||||||||| || ||| Sbjct 5351616 TTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTG 5351557 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| |||| ||||| || || || || || | ||| ||||| ||||| || Sbjct 5351556 GCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTACCAGTG 5351497 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| Sbjct 5351496 AGGGTCTTCACAAAGATCTGCAT 5351474 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| ||||| || |||||||| || || | | | ||||| | || Sbjct 5351448 TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCGAGCTGC 5351389 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||||||| | ||||| | || || ||| ||||| ||||| || || || || Sbjct 5351388 TTGCCAGCGAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCCTTATCTTGGATCTTA 5351329 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || ||||||||||| || || || | ||| ||||| || || ||| Sbjct 5351328 GCCTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTC 5351269 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| Sbjct 5351268 AGGGTCTTCACAAAGATCTGCAT 5351246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362170318913292