Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq450 102 7e-17 seq253 96.9 3e-15 >seq450 Length=100941466 Score = 102 bits (112), Expect = 7e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || ||||| || ||||| || || || ||||| | |||| ||| || Sbjct 88063152 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAACCTCTTTTCTTC 88063093 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||| || | ||||| || || ||||| || |||||||| ||||||||||| ||| Sbjct 88063092 AGCCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGCT 88063033 Query 13295 A 13295 | Sbjct 88063032 A 88063032 >seq253 Length=134823679 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 13161 CACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAA 13220 |||| | || | | |||||||| || || || || || || || |||| || ||||| | Sbjct 117709171 CACAATACATTACCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTTAATCCGGGCATCA 117709112 Query 13221 GCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAA 13280 | || | || || | |||||| || |||||||| ||||||||||| || || ||||||| Sbjct 117709111 GGCCCCTCTTCTTCAGCCAAAAAATCGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAA 117709052 Query 13281 CTGCTGCAAACGCTATCAACCTTTCACC 13308 |||| || || || | || || ||||| Sbjct 117709051 CTGCAGCGAAGGCAACCACTCTCTCACC 117709024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430971831772824