Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq450 172 1e-37 seq769 163 7e-35 seq756 145 2e-29 seq253 113 1e-19 seq808 84.2 5e-11 >seq450 Length=100941466 Score = 172 bits (190), Expect = 1e-37 Identities = 136/163 (83%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| |||| |||||||| |||||||||||||| | ||||||||| Sbjct 72317928 GCTTTATGGTGGTATTATGTCTCCAAAGGAATCGAATACCTAGATACAGTGTTCTTCATC 72317987 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | |||||||| || ||||| |||||||| ||||| ||||| ||||| || ||||| Sbjct 72317988 CTGAGGAAGAAATTCAACCAAATCAGTTTTCTTCATGTCTATCACCATTTCACCATGTTC 72318047 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 |||||| | ||||| ||||| || ||| | ||||| ||||||| Sbjct 72318048 ACTTTGTGGTGGATTGGTATCAAGTGGGTTGCAGGTGGACAAG 72318090 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| || ||||| || || ||||| || |||||||| || |||||||| Sbjct 88063019 GGAGAACGTGTAGTAGCATTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 88063078 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| ||||||||||||| | ||||| ||| | ||||| ||||| || | Sbjct 88063079 TCCATTTTTTGGCTGAAGAAAAGAGGTTTAATGCCTGGACTCACTTTTTCTAATGAGCTC 88063138 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 88063139 ATCAGTAGAGATGA 88063152 Score = 87.8 bits (96), Expect = 4e-12 Identities = 101/135 (75%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 78644 GGACAAGCGTTTCTAGGAGCTGAAATAAATTCATTCGTACACGTTATTATGTATACTTAT 78703 ||||| || ||| | |||||| | || || |||| | || ||||||||||| | ||| Sbjct 72319810 GGACA-GCTTTTTTTGGAGCTCAGATGAACGCATTTATTCATGTTATTATGTACATGTAT 72319868 Query 78704 TACGGTATTGCTGCATGCGGCCCTACATTTCGTAAGTATTTGTGGTGGAAGAGATATCTT 78763 || || | ||||| || ||||||| | ||| || ||| |||||||||| |||| | Sbjct 72319869 TATGGACTAGCTGCCTGTGGCCCTAAAGTTCAGAAATATCTGTGGTGGAAACGATACTTG 72319928 Query 78764 ACTATAATGCAATTG 78778 |||||| |||||||| Sbjct 72319929 ACTATACTGCAATTG 72319943 >seq769 Length=8760791 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || || || ||||| || || |||||| Sbjct 5350791 ATCCCTCCCCTCAGACGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCA 5350732 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | |||||||| || || || ||||| || || | |||||| ||||| ||| Sbjct 5350731 GACAGGGTGCGCCCGTCTTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCGGGA 5350672 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||||||||| ||||| || || ||||| || | ||||||||| || || Sbjct 5350671 GGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCA 5350612 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| | || || ||||| |||||||| Sbjct 5350611 ACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5350562 Score = 159 bits (176), Expect = 8e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || ||||||||||| || |||||| Sbjct 5350563 ATCCCTCCCCTGAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCA 5350504 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | |||||||| || || || |||||||| || |||||||| ||||| ||| Sbjct 5350503 GACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGA 5350444 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || ||||| || || ||||| || | ||| || || || || Sbjct 5350443 GGAATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCA 5350384 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||| ||||| || || || ||||| |||||||| || Sbjct 5350383 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 5350331 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || || || ||||| || || |||||| Sbjct 5351247 ATCCCACCCCTGAGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCA 5351188 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | |||||||| || || || |||||||| || |||||||| ||||||||| Sbjct 5351187 GACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGA 5351128 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || || ||||| || || || || || | ||| || || || || Sbjct 5351127 GGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCA 5351068 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || ||||| |||||||| Sbjct 5351067 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5351018 Score = 158 bits (174), Expect = 3e-33 Identities = 153/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || |||||||| || || | || ||||| || || || ||| Sbjct 5351670 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 5351611 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| ||||| ||||| || |||||||| || || ||||| || || Sbjct 5351610 GCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTC 5351551 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| || || || || ||||| || || || ||||||||||| || || Sbjct 5351550 ACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTACCAGTGAGGGTC 5351491 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 5351490 TTCACAAAGATCTGCAT 5351474 >seq756 Length=11697260 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || || || ||||| || |||||||| Sbjct 3815428 ATCCCTCCCCTGAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCG 3815369 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| |||||||| ||||| || || ||||||||||| ||||| Sbjct 3815368 GACAGTGTGCGCCCATCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGTTGGTCAGGG 3815309 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| ||||| || || || || || | ||| ||||| ||||| Sbjct 3815308 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCA 3815249 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || || || ||||| || | || || ||||| |||||||| Sbjct 3815248 ACCTCCAAGGTGATGGTTTTACCTGTCAAGGTCTTCACAAAGATCTGCAT 3815199 >seq253 Length=134823679 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| || || || || ||||| || ||||||||||| || ||||| || || |||||| Sbjct 117709036 GTTGCCTTCGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCATTTGCTGCGATTTTTTGG 117709095 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| ||||| |||||||||||||| || ||| | || ||||| || Sbjct 117709096 CTGAAGAAGAGGGGCCTGATGCCCGGATTAACTTTCTCCAATGAACTTATTAGCAGAGAT 117709155 Query 269258 GA 269259 || Sbjct 117709156 GA 117709157 >seq808 Length=67000979 Score = 84.2 bits (92), Expect = 5e-11 Identities = 180/267 (67%), Gaps = 4/267 (1%) Strand=Plus/Minus Query 174074 AGTAAATATTCTAAACGAATTATACTACAATTAAGTATTGAATGTGAAACTTGTGGAACT 174133 ||| |||| || | ||| ||||||||||| | ||| |||||| | ||||| |||||| | Sbjct 52958603 AGTGAATACTCCACACGGATTATACTACAGTCAAGGATTGAAGGAGAAACAGGTGGAATT 52958544 Query 174134 TTCAGCTGTTTATTATTCCAAATTTCAATATTACCAG--GAAGTAGTTGCTTTCCACGCG 174191 |||||| ||| |||||| |||| | || |||| || || | | ||||||| Sbjct 52958543 TTCAGCGCTTTCCCATTCCAGGTTTCTGTTTTGCCAGATGATAAAGAT--TCTCCACGCA 52958486 Query 174192 ATGAGGTAATAAGGTTTCTAACTTTCTTTATGTTTCTATCAGTATAAAATGTCTGTATTT 174251 || || ||| | | | |||| ||| || || | | | |||||||| |||| ||| Sbjct 52958485 GGTTGGCAACAAGCTGTTTGACTTCCTTCATTTTCCCCTTGGCATAAAATGCCTGTGTTT 52958426 Query 174252 GGTAGATACAGACATTAGGCATTACTGCACGAGATGAATTATTTTCAATTTCTGCAACTA 174311 |||| || | || |||| || |||| || || || ||||| || |||| | Sbjct 52958425 GGTAAATGGCTGCCTTTGGCACCACCACACGGGAAGAGCAGTTCTCAATCTCAGCAAAGA 52958366 Query 174312 TCCTAACGTATTCACCAGGTACATAAC 174338 || || ||||||| | ||| ||| Sbjct 52958365 TCTGAATTGATTCACCTGAAACAAAAC 52958339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151368718388496