Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq756 89.7 4e-13 >seq756 Length=11697260 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | ||| || ||| |||||| || ||||| ||||||| |||| ||| | || || Sbjct 3815180 CACAAGATGCAGGGTGGACTCCTTCTGGATGTTATAATCAGACAATGTGCGCCCATCTTC 3815121 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| || | | || || | |||||| || || | | ||||| ||| Sbjct 3815120 CAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTGGGATGCCCTCCTTATCCTG 3815061 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||||| | | | ||||| || | | ||| ||| | ||| ||||| || Sbjct 3815060 GATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCCAATGTGATGGTCTT 3815001 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCTTG 48735 ||||| || || ||||| || ||||||||| |||| || Sbjct 3815000 CCCGGTCAGTGTCTTCACGAAGATCTGCATCTTGTCCTG 3814962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421240870394012