Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq711 150 3e-31 seq761 129 8e-25 >seq711 Length=26894524 Score = 150 bits (166), Expect = 3e-31 Identities = 223/312 (71%), Gaps = 3/312 (1%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| || ||| | |||| || ||| | | ||| Sbjct 8959359 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 8959300 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||||||||| | ||| || |||||||| || |||||||| | |||| Sbjct 8959299 TATTGATTATTTCAAACCCCACTTTTCCACCAAAGGTGCTTGGCTTCCAGTACTCAGGGG 8959240 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||| || || |||| || ||||| || || ||||| || || | || | || Sbjct 8959239 AGCATATTGTATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCACCAATTTCTACCATTG 8959180 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAACTCC 8917 | ||||| |||||||| || || |||||||| || ||||| |||| |||| ||| Sbjct 8959179 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTAC-AAGAAGGCCGGGATACAGTTCC 8959121 Query 8918 ACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT- 8976 | ||| || |||||||| ||||| | ||||| ||||| ||||| ||||||||||| Sbjct 8959120 ATAGCATCTATGTCTCCATAAAGTTCTTCTAGTTCAGCAGCCATTTCTTTTTCTCCTGTA 8959061 Query 8977 TTTATTAATAAA 8988 |||||||| || Sbjct 8959060 ATTATTAATGAA 8959049 Score = 113 bits (124), Expect = 6e-20 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| || |||||||| || || || ||| ||| |||||||| || |||||| Sbjct 8957342 ATGAGTCTTGTAGTCTGAAATAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAAG 8957283 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || ||||| |||||||| || ||||| || || || |||||||| | || || Sbjct 8957282 ATGTCACAGACTCTATTGTGTTCTCTCAGCCATATTGTTGCATACATCATTAAGCCTGGG 8957223 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| |||||| |||| || || |||| | | | | || || || | ||||| Sbjct 8957222 ACCAAGCCAAACACCTCCTGCCCAACAGAAAACTGTAGGTGCTCAGGAACATGAGGAGGG 8957163 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | | || || || || | || ||||||||||| || | ||| ||| Sbjct 8957162 TAGATCATCTCTGCTTGAGTGTCCTTTACAGTTGGTGGATACATTTCTCCATTAATCATC 8957103 Query 9862 TG 9863 || Sbjct 8957102 TG 8957101 >seq761 Length=8971062 Score = 129 bits (142), Expect = 8e-25 Identities = 175/244 (72%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791 ||||| ||||||||||| | || || |||| || ||||| ||||| |||||||| Sbjct 7233326 GTTGCCGTCTTGACGATCTCGAAGCCGGTTGCTCCACCAAAGGTACTGGGCTTCCAGTAC 7233267 Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851 | |||||||||||| |||| | | || || || || ||||| ||||| || | ||| Sbjct 7233266 TCTGGGGAGCAGATGGGGTTCCCAAGAAGTCCCTTCAGTGAAAATGGAGCGCCAATCTCC 7233207 Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911 | ||||| || || |||||| ||||||| |||| || || | || | ||| | || Sbjct 7233206 ACCATGCTTTCCCCAAAGATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAGTCCTGGATAA 7233147 Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCT 8971 ||||||| ||| |||||||| || || || || || || || || | |||| ||| Sbjct 7233146 AACTCCAGAGCATCGATGTCCCCATACAGCTCCTCCAGCTCTGCTGCCTTCTCCTCCTCT 7233087 Query 8972 CCTG 8975 |||| Sbjct 7233086 CCTG 7233083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708506980601280