Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 123 4e-24 seq450 105 1e-18 >seq1 Length=175656249 Score = 123 bits (136), Expect = 4e-24 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||||||||| || ||||| |||||||| || || || || Sbjct 43763678 CGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGTCTGGCGCGGCGCGGCGGC 43763737 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||||| |||| || || |||| || |||| || | || | ||| | ||||| Sbjct 43763738 GTGAAGCGCATCTCGGGGCTGATCTACGAGGAGACGCGCGGCGTGCTCAAGGTGTTCCTG 43763797 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| || || || ||| ||||||||||| || | ||||| ||||| Sbjct 43763798 GAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTCACG 43763857 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||||||| | ||||| || | ||||| || || || Sbjct 43763858 GCCATGGACGTGGTCTACGCGCTCAAACGCCAGGGACG 43763895 Score = 123 bits (136), Expect = 4e-24 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| |||||||| || || || Sbjct 43814450 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGTCTGGCGCGGCGCGGC 43814391 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| || | || | ||| | ||| Sbjct 43814390 GGCGTGAAGCGCATCTCGGGGCTGATCTACGAGGAGACGCGCGGCGTGCTCAAGGTGTTC 43814331 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| ||||||||||| || | ||||| ||| Sbjct 43814330 CTGGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTC 43814271 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| | ||||| || | ||||| || || || Sbjct 43814270 ACGGCCATGGACGTGGTCTACGCGCTCAAACGCCAGGGACG 43814230 Score = 120 bits (132), Expect = 5e-23 Identities = 176/249 (71%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| || || || Sbjct 43785243 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGCCTGGCGCGGCGCGGC 43785302 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || || |||| || |||| || | || | ||| | ||| Sbjct 43785303 GGCGTCAAGCGCATCTCGGGGCTGATCTACGAGGAGACGCGCGGCGTGCTCAAGGTGTTC 43785362 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| ||||||||||| || | ||||| ||| Sbjct 43785363 CTGGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTC 43785422 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| | ||||| || | || || || || || | | || || || || Sbjct 43785423 ACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGACGCACCCTCTACGGCTTCGGC 43785482 Query 16694 AGTTAATCT 16702 ||||| || Sbjct 43785483 GGTTAAACT 43785491 Score = 120 bits (132), Expect = 5e-23 Identities = 176/249 (71%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| || || ||| Sbjct 43828998 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGCCTGGCGCGGCGCGGT 43829057 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| || | || | ||| | ||| Sbjct 43829058 GGCGTGAAGCGCATCTCGGGGCTGATCTACGAGGAGACGCGCGGCGTGCTCAAGGTGTTC 43829117 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| ||||||||||| || | ||||| ||| Sbjct 43829118 CTGGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTC 43829177 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| | ||||| || | || || || || || | | || || || || Sbjct 43829178 ACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGACGCACCCTCTACGGCTTCGGC 43829237 Query 16694 AGTTAATCT 16702 ||||| || Sbjct 43829238 GGTTAAACT 43829246 Score = 120 bits (132), Expect = 5e-23 Identities = 176/249 (71%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| || || || Sbjct 43867057 CTGCGTGACAACATCCAGGGCATCACCAAGCCGGCCATCCGGCGCCTGGCGCGGCGCGGC 43867116 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || || |||| || |||| || | || | ||| | ||| Sbjct 43867117 GGCGTCAAGCGCATCTCGGGGCTGATCTACGAGGAGACGCGCGGCGTGCTCAAGGTGTTC 43867176 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| ||||||||||| || | ||||| ||| Sbjct 43867177 CTGGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTC 43867236 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| | ||||| || | || || || || || | | || || || || Sbjct 43867237 ACGGCCATGGACGTAGTCTACGCGCTTAAGCGCCAGGGACGCACCCTCTACGGCTTCGGC 43867296 Query 16694 AGTTAATCT 16702 ||||| || Sbjct 43867297 GGTTAAACT 43867305 Score = 116 bits (128), Expect = 6e-22 Identities = 175/249 (70%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || || ||||| || ||||||||||| || ||||| || ||||| || || || Sbjct 43806059 CTGCGCGACAATATCCAGGGCATCACCAAGCCGGCCATCCGCCGCCTGGCGCGGCGCGGC 43806118 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| ||| | || | ||| | ||| Sbjct 43806119 GGCGTGAAGCGCATCTCGGGGCTGATCTACGAGGAGACTCGCGGCGTGCTCAAGGTGTTC 43806178 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| ||||||||||| || | ||||| ||| Sbjct 43806179 CTGGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTC 43806238 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| | ||||| || | || || || || || | | || || || || Sbjct 43806239 ACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGACGCACCCTCTACGGCTTCGGC 43806298 Query 16694 AGTTAATCT 16702 ||||| || Sbjct 43806299 GGTTAAACT 43806307 Score = 114 bits (126), Expect = 2e-21 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| || || || Sbjct 43786854 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGCCTGGCGCGGCGCGGC 43786795 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| || | || | ||| | ||| Sbjct 43786794 GGCGTGAAGCGCATCTCGGGGCTGATCTACGAGGAGACGCGCGGCGTGCTCAAGGTGTTC 43786735 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| ||||||||||| || | ||||| ||| Sbjct 43786734 CTGGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTC 43786675 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| | ||||| || | || || || || || Sbjct 43786674 ACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGACG 43786634 Score = 89.7 bits (98), Expect = 8e-14 Identities = 133/185 (72%), Gaps = 3/185 (2%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| |||||||| || || ||| Sbjct 43767497 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGTCTGGCGCGGCGCGGT 43767438 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| || | || | ||| | ||| Sbjct 43767437 GGCGTGAAGCGCATCTCGGGGCTGATCTACGAGGAGACGCGCGGCGTGCTCAAGGTGTTC 43767378 Query 16574 CTCAAGACCGTTATCCATGATGCTTTC-CACT-ATACC-GAGCACGCTAAACGTAAGACT 16630 || ||| ||| |||| || || || |||| | ||| ||| || || | ||||| Sbjct 43767377 CTGGAGAACGTCATCCGCGACGCCGTCACACTAACACCAGAGGCAGCCAAGAGGAAGACG 43767318 Query 16631 GTCAC 16635 ||||| Sbjct 43767317 GTCAC 43767313 >seq450 Length=100941466 Score = 105 bits (116), Expect = 1e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 16470 AAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCT 16529 |||| ||||||||||| || ||||| || ||||| || || || || || ||||| ||| Sbjct 88732553 AAGGCATCACCAAGCCGGCCATCCGCCGCCTGGCGCGGCGCGGCGGCGTGAAGCGCATCT 88732612 Query 16530 CTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCC 16589 | || || |||| || |||| || | || | ||| | ||||| ||| ||| |||| Sbjct 88732613 CGGGGCTGATCTACGAGGAGACGCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTCATCC 88732672 Query 16590 ATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCG 16649 || || || ||| ||||||||||| || | ||||| ||||| ||||||| | | Sbjct 88732673 GCGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGG 88732732 Query 16650 TCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| || | || || || || || | | || || || || ||||| || Sbjct 88732733 TCTACGCGCTCAAGCGCCAGGGACGCACCCTCTACGGCTTCGGCGGTTAAACT 88732785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073360414316