Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq756 102 8e-17 seq769 95.1 1e-14 >seq756 Length=11697260 Score = 102 bits (112), Expect = 8e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || || || ||| | |||||| | || | ||| | | | Sbjct 3815199 ATGCAGATCTTTGTGAAGACCTTGACAGGTAAAACCATCACCTTGGAGGTTGAACCCAGC 3815258 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | || || ||||| ||||| || || || || || || ||| Sbjct 3815259 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAA 3815318 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG-AAAC-GTCAGCGACTATA 26946 || || || || | || ||||||||||| ||||||| | | || ||| |||||||| Sbjct 3815319 CAGAGGCTGATCTTCGCTGGCAAACAACTGGAAGATGGGCGCACACTGTC--CGACTATA 3815376 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||| || || || || || ||||||| || ||| | || || ||||| Sbjct 3815377 ACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCCTCAGGGGAGG 3815425 >seq769 Length=8760791 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| | ||||| || | |||||| | || | ||| | | Sbjct 5350790 ATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAACCCAGT 5350849 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||| |||||||| || || ||||||||||| Sbjct 5350850 GACACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAAGAGGGCATTCCTCCCGATCAG 5350909 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | || ||||| || || ||||||| | | | | ||||| ||| Sbjct 5350910 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 5350969 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||| || || | ||||| || ||| | || || ||||| Sbjct 5350970 ATCCAGAAAGAGTCCACCCTGCATCTTGTGCTGCGCCTCAGGGGAGG 5351016 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | ||||| || || | ||||| || | |||||| | || | || | Sbjct 5350331 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 5350390 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 | |||||||||||| | || || ||||| ||||| ||||| || ||||||||| Sbjct 5350391 AGTGACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCCGAT 5350450 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || || || || | | ||||| || || ||||| | | | | | ||||| Sbjct 5350451 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTAC 5350510 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| ||||| || ||| | || ||||| ||| | || || ||||| Sbjct 5350511 AACATTCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTCAGGGGAGG 5350560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478650361640640