Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq769 95.1 1e-14 >seq769 Length=8760791 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| || || | ||||| || | || ||| | || || ||| || Sbjct 5350331 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 5350390 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | |||||||||||| | || || ||||| ||||| |||||||| ||||||||| Sbjct 5350391 AGTGACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCCGAT 5350450 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||||| ||||| | | |||||||| || ||||| | | | | | || || Sbjct 5350451 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTAC 5350510 Query 24168 AACATTCAAAAAGAATCTAC 24187 |||||||| ||||| || || Sbjct 5350511 AACATTCAGAAAGAGTCCAC 5350530 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||| || | || ||| | || || ||| ||| | Sbjct 5350562 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 5350621 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | || || ||||| || ||||||||||| ||||||||||| Sbjct 5350622 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCCGATCAG 5350681 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||||| |||| | || |||||||| |||||||| Sbjct 5350682 CAGAGGTTGATCTTCGCTGGCAAGCAGCTCGAAGA 5350716 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | ||||| || | || ||| | || || || ||| Sbjct 5350790 ATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAACCCAGT 5350849 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| |||||||| ||||| ||||||||||| Sbjct 5350850 GACACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAAGAGGGCATTCCTCCCGATCAG 5350909 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || |||||||| || ||||||| | | | | || || ||| Sbjct 5350910 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 5350969 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || ||||| || || | ||| | ||| Sbjct 5350970 ATCCAGAAAGAGTCCACCCTGCATCTTGTG 5350999 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | || ||| | || || ||| ||| | Sbjct 5351246 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 5351305 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | || || ||||| || || |||||||| ||||||||||| Sbjct 5351306 GATACCATTGAGAACGTGAAGGCTAAGATCCAAGATAAGGAAGGCATTCCTCCCGATCAG 5351365 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || |||||||| |||||||||| | | | | | || || ||| Sbjct 5351366 CAGAGGTTGATCTTCGCTGGCAAGCAGCTCGAAGATGGCCGTACCCTGTCTGACTACAAC 5351425 Query 24171 ATTCAAAAAGAATCTAC 24187 || || ||||| || || Sbjct 5351426 ATCCAGAAAGAGTCCAC 5351442 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | || ||| | || || ||| ||| Sbjct 5351018 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 5351077 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| |||||||||||||| ||||| ||||| Sbjct 5351078 GACACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCAG 5351137 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||||| ||||| | | |||||||| || ||||| Sbjct 5351138 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA 5351172 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | || ||| | || || ||| ||| Sbjct 5351474 ATGCAGATCTTTGTGAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCCAGT 5351533 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || ||||| |||||||||||||| ||||||||||| Sbjct 5351534 GACACCATTGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAG 5351593 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| ||||| | | |||||||| || ||||||| Sbjct 5351594 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATG 5351630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429925457431860