Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq756 116 3e-21 seq769 107 2e-18 >seq756 Length=11697260 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| |||||| ||||||| | || || || | Sbjct 3815199 ATGCAGATCTTTGTGAAGACCTTGACAGGTAAAACCATCACCTTGGAGGTTGAACCCAGC 3815258 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| || || || || ||||||||| Sbjct 3815259 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAA 3815318 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || || ||||||||| | ||||||| ||||| || ||| || || Sbjct 3815319 CAGAGGCTGATCTTCGCTGGCAAACAACTGGAAGATGGGCGCACACTGTCCGACTATAAC 3815378 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || ||| | ||||| | || || ||||| Sbjct 3815379 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCCTCAGGGGAGG 3815425 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || ||| ||||||| | || || || | | Sbjct 3815427 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAAACCATCACCTTGGAGGTTGAACCCAGT 3815486 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| || || || || ||||||||| Sbjct 3815487 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCTGACCAA 3815546 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| || || || | ||||||| ||||| || ||| ||||| Sbjct 3815547 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGCACACTGTCCGACTACAAC 3815606 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAA 25228 || || || || ||||| || ||| | ||||| | || || || || || Sbjct 3815607 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTCAGGGGCGGTAA 3815656 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || |||||||| | || ||||| | | Sbjct 3814971 ATGCAGATCTTCGTGAAGACACTGACCGGGAAGACCATCACATTGGAGGTGGAACCCAGT 3815030 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| || || || || || ||||||||||| Sbjct 3815031 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCACCTGACCAG 3815090 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| || || || | ||||||| ||||| || ||||| || Sbjct 3815091 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGCACATTGTCTGATTATAAC 3815150 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || ||| | ||||| Sbjct 3815151 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCT 3815182 >seq769 Length=8760791 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | || || ||| | | Sbjct 5351018 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 5351077 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| ||||||||||| ||||| ||||| || Sbjct 5351078 GACACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCAG 5351137 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| ||||| || | ||||| | ||||| || || ||||| Sbjct 5351138 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 5351197 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || ||| | ||||| Sbjct 5351198 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCT 5351229 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || ||||| ||||||| | || || ||| | | Sbjct 5351474 ATGCAGATCTTTGTGAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCCAGT 5351533 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| || ||| ||||||||||| ||||| || || || Sbjct 5351534 GACACCATTGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAG 5351593 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| ||||| || | ||||||| ||||| || || ||||| Sbjct 5351594 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 5351653 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 || || || || ||||| || || | ||||| | || || || || |||| Sbjct 5351654 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTCAGGGGTGGCTATTA 5351706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433317374255780