Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq756 187 5e-42 seq769 176 8e-39 seq799 84.2 4e-11 seq450 84.2 4e-11 >seq756 Length=11697260 Score = 187 bits (206), Expect = 5e-42 Identities = 172/218 (79%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | || || |||||||| || |||||||| || ||||| ||||| | | Sbjct 3815644 AGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGC 3815585 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||||||||| || || || | || |||||||| || || || || ||| Sbjct 3815584 CCATCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGTTGGTCAGGAGGGATTCCCTCC 3815525 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| ||| ||| |||||||| | ||| || ||||||||| Sbjct 3815524 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAACCTCCAAGGTG 3815465 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| || || |||||||||||||| |||||||| Sbjct 3815464 ATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 3815427 Score = 183 bits (202), Expect = 6e-41 Identities = 179/228 (79%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | ||||||| || | || || |||||||| || ||||||||||| ||||| Sbjct 3815425 CCTCCCCTGAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAC 3815366 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | ||||||||| | || || || ||||| || || || |||||||| || || Sbjct 3815365 AGTGTGCGCCCATCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGTTGGTCAGGGGGG 3815306 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA-TTCTAC 68413 ||||| |||||||| || ||||| ||||| ||| ||| |||||||| |||| ||| || Sbjct 3815305 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC-GCTGGGTTCAAC 3815247 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||||||||| || || | |||||| || || |||||||| Sbjct 3815246 CTCCAAGGTGATGGTTTTACCTGTCAAGGTCTTCACAAAGATCTGCAT 3815199 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| || | || || |||||||| || |||||||||||||| || Sbjct 3815197 CCGCCCCGCAGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTATAATCAGAC 3815138 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | ||||||||| | ||||||||| || || || | || || ||||| ||||| Sbjct 3815137 AATGTGCGCCCATCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTGGG 3815078 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || || ||||| |||||||| |||||||||||| | ||| || Sbjct 3815077 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACC 3815018 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| || || || || ||||| ||||| |||||||| Sbjct 3815017 TCCAATGTGATGGTCTTCCCGGTCAGTGTCTTCACGAAGATCTGCAT 3814971 >seq769 Length=8760791 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | ||||||| || | || || ||||||||||| |||||||| || || || Sbjct 5351016 CCTCCCCTGAGGCGCAGCACAAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 5350957 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | |||||| || ||||| || || || || || ||||| ||| Sbjct 5350956 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGA 5350897 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| || |||||||| ||||| ||||| ||| |||||||||||| | ||| || Sbjct 5350896 ATGCCCTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGTTCAACC 5350837 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || ||||| || ||||| |||||||| Sbjct 5350836 TCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 5350790 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | ||||||| |||| ||| || ||||||||||| || ||||| || || || Sbjct 5350560 CCTCCCCTGAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCAGAC 5350501 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||| ||||| | |||||| || || || || || || || || ||||| ||| Sbjct 5350500 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 5350441 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| ||||| ||||| || |||||||||||| | || || Sbjct 5350440 ATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACC 5350381 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || |||||||| || || |||||||| Sbjct 5350380 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5350334 Score = 167 bits (184), Expect = 4e-36 Identities = 170/219 (78%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || ||||||||||| |||||||| || || || || || | Sbjct 5351463 AGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGG 5351404 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || ||||| || | || || || ||||| |||||||||||| Sbjct 5351403 CCATCTTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCC 5351344 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 || ||||| ||||| ||||| ||| ||| ||||| || ||| | || || || | ||| Sbjct 5351343 TTATCTTGGATCTTAGCCTTCACGTTCTCAATGGTATC-GCTGGGCTCAACCTCAAGGGT 5351285 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || || |||||||| || || |||||||| Sbjct 5351284 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5351246 Score = 163 bits (180), Expect = 5e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || |||||||| || |||||||| || || || || || | | Sbjct 5351691 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 5351632 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || || ||||| ||||||||||| Sbjct 5351631 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCT 5351572 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| ||||| || || |||||||| | || || || | |||| Sbjct 5351571 TTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTG 5351512 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||||||||| || || |||||||| Sbjct 5351511 ATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTGCAT 5351474 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || | || || |||||||| || |||||||| || || || || || | | Sbjct 5351235 AGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 5351176 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | |||||| || || || || || || || || || || ||||||||||| Sbjct 5351175 CCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCT 5351116 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| ||||| ||| |||||||||||| | || || || | |||| Sbjct 5351115 TTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTG 5351056 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| || || |||||||| Sbjct 5351055 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5351018 Score = 134 bits (148), Expect = 3e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||| || | || || |||||||| || |||||||| || || || Sbjct 5350788 CCTCCCCTCAGACGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 5350729 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||| ||||| | |||||| || ||||| || | || || || ||||| ||| Sbjct 5350728 AGGGTGCGCCCGTCTTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCGGGAGGA 5350669 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 |||||||| || || || ||||| ||||| || ||| ||||| || ||| | || || Sbjct 5350668 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATC-GCTGGGCTCAAC 5350610 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || | |||||| || || |||||||| Sbjct 5350609 CTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5350562 >seq799 Length=4019625 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||| || ||||| ||||| ||| |||||||||||| | || || || Sbjct 2931056 CCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACCTCA 2931115 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || || || |||||||| || || |||||||| Sbjct 2931116 AGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2931159 >seq450 Length=100941466 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 10740 ACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGG 10799 ||||||||| | |||||||| | ||| ||||||||||||||||||| | |||||| || Sbjct 88060647 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 88060588 Query 10800 TACCGGATGGGGAA 10813 ||| |||||||||| Sbjct 88060587 TACTGGATGGGGAA 88060574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921599221196640