Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq769 98.7 8e-16 >seq769 Length=8760791 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || || || || |||||| || || || ||| Sbjct 5350986 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 5350927 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| || || ||||||||||| |||||||| ||||| || Sbjct 5350926 GCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCCTCTTTGTCTTGGATCTTGGCCTTC 5350867 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| ||| || || | ||| | || ||||| ||||| ||| Sbjct 5350866 ACGTTCTCGATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTT 5350807 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 5350806 TTCACGAAGATCTGCAT 5350790 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || || ||||| |||||| || || || ||| Sbjct 5351442 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCGAGCTGCTTGCCA 5351383 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | | ||| || || |||||||||||||| || || ||||| || Sbjct 5351382 GCGAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCCTTATCTTGGATCTTAGCCTTC 5351323 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| ||| ||| || || || | ||| | || ||||| ||||| || Sbjct 5351322 ACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 5351263 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 5351262 TTCACAAAGATCTGCAT 5351246 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| ||||||||||| || || || || ||||| || || || ||| Sbjct 5350530 GTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 5350471 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || |||||||||||||| ||||| ||||| || Sbjct 5350470 GCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTC 5350411 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || || | ||| | || ||||| ||||| || Sbjct 5350410 ACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 5350351 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 5350350 TTCACAAAGATCTGCATG 5350333 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || |||||| || || || ||| Sbjct 5351670 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 5351611 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || |||||||||||||||||||| ||||| || Sbjct 5351610 GCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTC 5351551 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| |||||| ||| || || || | ||| | || || || || || || Sbjct 5351550 ACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTACCAGTGAGGGTC 5351491 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 5351490 TTCACAAAGATCTGCAT 5351474 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || ||||| || || || ||| Sbjct 5351214 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 5351155 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || |||||||||||||||||||| ||||| || Sbjct 5351154 GCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTC 5351095 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || || | ||| | || ||||| ||||| || Sbjct 5351094 ACGTTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 5351035 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 5351034 TTCACAAAGATCTGCAT 5351018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420124097779344