Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 7e-15 seq253 84.2 4e-11 >seq1 Length=175656249 Score = 96.9 bits (106), Expect = 7e-15 Identities = 156/220 (71%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 244321 CCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT 244380 ||| |||||||| || ||||| || || ||| || || | || ||||||| Sbjct 174292342 CCCTTTGCTGACAGGAGAACCCTCATACGTTTCGTAAGGCCCTTGCTCCTTCGCCAGCTC 174292401 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCG 244440 ||||||| | || || || | || || |||||||| |||||| || ||||| | ||| Sbjct 174292402 ACAGCTCGCTTCCAGAGCACCATAATAAATGGTCTCAAAGATCTGCTGGTTCAGG-CGCT 174292460 Query 244441 G-GCCTTGCCGCAGGTG--AAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTG 244497 | |||| | | | | ||||||| | ||||| |||||| | || ||||| ||||| Sbjct 174292461 GCGCCT--CAGGACTTTCAAAGGGGAACCTCATCAGGATGAAGGCATCAGCCAGGCCCTG 174292518 Query 244498 CACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 ||| || ||||||||||| | ||| || | ||||||||| Sbjct 174292519 CACACCAATGCCGATGGGACGGTGGCGTCTATTGGAGCGC 174292558 Score = 96.9 bits (106), Expect = 7e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 || |||| ||||||||| || || ||||||||||| ||| ||||| |||| | |||| Sbjct 174295746 ACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCACGCTGC 174295805 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || || || ||||||||| | | || | ||| ||||||| ||| | |||||| ||| Sbjct 174295806 TCTTCTTTCCCGGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAGGTGCCACGGC 174295865 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGG 245148 |||| ||||| || | || ||||| Sbjct 174295866 TCCAGGTAGATGGCAAAAGCCCCGGG 174295891 Score = 84.2 bits (92), Expect = 4e-11 Identities = 89/116 (77%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| || | |||| |||| || || || ||||||||||| ||||| |||||||| Sbjct 174294480 ACCTCATCTTTGCTGGTATACTCCACTATTTCTGTGCAGAGGTTGCTGCATTTGATGGTC 174294539 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG-AAGG 244820 |||| || ||| |||||| ||| |||||| | ||| ||||| |||||| |||| Sbjct 174294540 CCCAAGTTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGG 174294595 >seq253 Length=134823679 Score = 84.2 bits (92), Expect = 4e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| ||||| | || || || ||||||||||| ||||| | || || Sbjct 117709024 GGTGAGAGAGTGGTTGCCTTCGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCATTTGCT 117709083 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||||||| | || ||||| || ||||| Sbjct 117709084 GCGATTTTTTGGCTGAAGAAGAGGGGCCTGATGCCCGGATTAACTTTCTCCAATGAACTT 117709143 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 117709144 ATTAGCAGAGATGAGG 117709159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944315449869120