Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq756 105 7e-18 seq743 93.3 5e-14 seq1 93.3 5e-14 >seq756 Length=11697260 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | |||| ||| | ||||| ||| |||||| || || ||||| || | Sbjct 3815654 ACCGCCCCTGAGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3815595 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || ||| | || || |||||||| ||||| || || | | ||| ||||| | || Sbjct 3815594 CAGTGTGCGCCCATCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGTTGGTCAGGAGG 3815535 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||||||| ||| || || | || | | ||||| || | ||| || Sbjct 3815534 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAAC 3815475 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||||||||| || || ||||| || ||||| ||||| Sbjct 3815474 CTCCAAGGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 3815427 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | |||| ||| | ||| | ||| |||||| || || || || || | | Sbjct 3815425 CCTCCCCTGAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAC 3815366 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| | || || || || || |||||||| || || | ||| ||||| | || Sbjct 3815365 AGTGTGCGCCCATCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGTTGGTCAGGGGGG 3815306 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||||||| ||| || || | || | | |||||||| | ||| || Sbjct 3815305 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCAACC 3815246 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||||| || || | ||||| |||||||| ||||| Sbjct 3815245 TCCAAGGTGATGGTTTTACCTGTCAAGGTCTTCACAAAGATCTGCAT 3815199 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 3813087 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3813028 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 3813027 TACTAACGAGGA 3813016 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 3813637 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3813578 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 3813577 TACTAACGAGGA 3813566 >seq743 Length=15706747 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 7246100 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 7246041 Query 57066 ATACTACCGAGGATTG 57081 |||||| |||||| || Sbjct 7246040 ATACTAACGAGGAGTG 7246025 >seq1 Length=175656249 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 42464097 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 42464038 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 42464037 TATACTAACGAGGA 42464024 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 75399321 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 75399262 Query 57066 ATACTACCGAGGATTG 57081 |||||| |||||| || Sbjct 75399261 ATACTAACGAGGAGTG 75399246 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 42464259 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 42464318 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 42464319 TACTAACGAGGA 42464330 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 75397860 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 75397919 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 75397920 TACTAACGAGGA 75397931 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 75398669 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 75398610 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 75398609 TACTAACGAGGA 75398598 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 41608520 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 41608461 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 41608460 TACTAACGAGGA 41608449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543199138198080