Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq769 114 1e-20 seq756 100 3e-16 >seq769 Length=8760791 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || |||||||| ||||| ||||| || || ||||| Sbjct 5350548 CGCAGCACCAGGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGCCCG 5350489 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | ||||||||||||||| ||||| |||||| Sbjct 5350488 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTG 5350429 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || ||| | | |||| |||||| | ||| || || | ||| | Sbjct 5350428 TCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 5350369 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || ||||| ||||||||| Sbjct 5350368 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 5350333 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | || |||||||| || || ||||| || || ||||| | Sbjct 5351004 CGCAGCACAAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 5350945 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| |||||| | ||||||||||||||| |||||||| ||| Sbjct 5350944 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCCTCTTTG 5350885 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || ||| | | |||| |||||| | || || || | ||| | Sbjct 5350884 TCTTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGTTCAACCTCAAGGGTGATG 5350825 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| ||||| || || |||||||| Sbjct 5350824 GTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 5350790 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || |||||||| || || ||||| || || || || | Sbjct 5351460 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA 5351401 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| ||||||| | ||||||||||||||| ||||| ||||| Sbjct 5351400 TCTTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCCTTA 5351341 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || ||| | | || | ||| || | ||| || || | ||| | Sbjct 5351340 TCTTGGATCTTAGCCTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATG 5351281 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || ||||| |||||||| Sbjct 5351280 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5351246 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | || ||||| || || || ||||| || || ||||| Sbjct 5350776 CGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCG 5350717 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| ||||||| | ||||||||||||||| ||||| || || Sbjct 5350716 TCTTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCTTTA 5350657 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | ||| || | ||| || || | ||| | Sbjct 5350656 TCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATG 5350597 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| |||| || || ||||| |||||||| Sbjct 5350596 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5350562 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || ||||| || || || ||||| || || ||||| | Sbjct 5351688 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 5351629 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | ||||||||||||||| ||||| || ||| Sbjct 5351628 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTG 5351569 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || ||| | | ||| | |||||| | ||| || || | ||| | Sbjct 5351568 TCTTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 5351509 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || || || ||||| |||||||| Sbjct 5351508 GTCTTACCAGTGAGGGTCTTCACAAAGATCTGCAT 5351474 >seq756 Length=11697260 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | || ||||| || || || ||||| ||| || ||||| | Sbjct 3815641 CGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGCCCA 3815582 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| ||||||| | ||| || || ||||| || ||||||||| Sbjct 3815581 TCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGTTGGTCAGGAGGGATTCCCTCCTTG 3815522 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | |||||| | || || || | ||| | Sbjct 3815521 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAACCTCCAAGGTGATG 3815462 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||| ||||| || || || || |||||||| Sbjct 3815461 GTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 3815427 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | || ||||| || || || || ||||| || ||||| | Sbjct 3815185 CGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTATAATCAGACAATGTGCGCCCA 3815126 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| ||||||| | |||||| || || || ||||||||||| Sbjct 3815125 TCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTGGGATGCCCTCCTTA 3815066 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| |||||| | || || || | || | Sbjct 3815065 TCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCCAATGTGATG 3815006 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || |||||||| || || || || |||||||| Sbjct 3815005 GTCTTCCCGGTCAGTGTCTTCACGAAGATCTGCAT 3814971 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | || ||||| || || || || || ||| || ||||| | Sbjct 3815413 CGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGACAGTGTGCGCCCA 3815354 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || ||||| |||||| |||||| | ||| || || || || |||||||||||| Sbjct 3815353 TCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGTTGGTCAGGGGGGATGCCCTCCTTG 3815294 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | |||||| | || || || | ||| | Sbjct 3815293 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCAACCTCCAAGGTGATG 3815234 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||| || |||| || || ||||| ||||||||| Sbjct 3815233 GTTTTACCTGTCAAGGTCTTCACAAAGATCTGCATG 3815198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475488841154880