Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq711 123 4e-23 seq761 104 3e-17 >seq711 Length=26894524 Score = 123 bits (136), Expect = 4e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || || ||||| | |||||| ||| |||| || || || || ||||| | | || ||| Sbjct 8957333 GTAGTCTGAAATAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAAGATGTCACAG 8957274 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 || || |||||||||||||||||||| || || ||||||||||| || || || || ||| Sbjct 8957273 ACTCTATTGTGTTCTCTCAGCCATATTGTTGCATACATCATTAAGCCTGGGACCAAGCCA 8957214 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 ||||| || | ||| || | ||| | || | || || || | || | || | ||| Sbjct 8957213 AACACCTCCTGCCCAACAGAAAACTGTAGGTGCTCAGGAACATGAGGAGGGTAGATCATC 8957154 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | | || || || || || || || ||||||||||| || | ||| | ||| Sbjct 8957153 TCTGCTTGAGTGTCCTTTACAGTTGGTGGATACATTTCTCCATTAATCATCTG 8957101 Score = 123 bits (136), Expect = 4e-23 Identities = 205/296 (69%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||||||| || ||||| ||| | || || | Sbjct 8959359 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 8959300 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || |||||||| || ||||||||| | |||| Sbjct 8959299 TATTGATTATTTCAAACCCCACTTTTCCACCAAAGGTGCTTGGCTTCCAGTACTCAGGGG 8959240 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||| || || |||| || ||||||| || ||||| || || | || | || Sbjct 8959239 AGCATATTGTATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCACCAATTTCTACCATTG 8959180 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || || || ||||| || | | ||| | || ||||| | Sbjct 8959179 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTACAAGAAGGCCGGGATACAGTTCCA 8959120 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||| | || ||||| || || || || ||| Sbjct 8959119 TAGCATCTATGTCTCCATAAAGTTCTTCTAGTTCAGCAGCCATTTCTTTTTCTCCT 8959064 Score = 93.3 bits (102), Expect = 6e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 ||||| |||||||| | ||| || | | || |||| | ||| || ||||| Sbjct 8958535 ATGGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCATGGATCTGAAAAGTG 8958476 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| || | |||||| |||| || |||||||| || || || |||||||||||| Sbjct 8958475 TCAGGCAGAAGTGGGTGCCAGTGGTACAGAGTATTGAATTCAGCTGCAATTCGGTTCTGG 8958416 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | ||| || ||||| | || | ||||||||| | Sbjct 8958415 TATTGAAAACGCTGGT--TGAACAGAAGCTCAGGATCAAACTTCAGTTTGAAGTGGTAGC 8958358 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 | || | ||||| || || | | || | || || || ||||| || || Sbjct 8958357 CACTCAAGTGCTGCACGTAATCTTCAATAACTATCTTGATCGTTTCTCCTGT 8958306 >seq761 Length=8971062 Score = 104 bits (114), Expect = 3e-17 Identities = 194/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953 ||||| |||||||||| || | ||| || | ||||| || || ||||| || Sbjct 7233365 GGACACTTCTTCACATTGAGGCACACGAGTTTCTCCAGTGTTGCCGTCTTGACGATCTCG 7233306 Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013 || || | || || ||||| ||||| ||||||||| | |||||||||||| |||| Sbjct 7233305 AAGCCGGTTGCTCCACCAAAGGTACTGGGCTTCCAGTACTCTGGGGAGCAGATGGGGTTC 7233246 Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073 | | || || |||| ||||| ||||| || | ||| | ||||| || || |||||| Sbjct 7233245 CCAAGAAGTCCCTTCAGTGAAAATGGAGCGCCAATCTCCACCATGCTTTCCCCAAAGATG 7233186 Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCG 9133 | ||| | ||||| || | | | || | || | || | ||| |||| ||| Sbjct 7233185 CCGTTGGGTTGGGGTTTCTCAAGCAGCAGTCCTGGATAAAACTCCAGAGCATCGATGTCC 7233126 Query 9134 CCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 ||||| || | |||| ||| || || |||||| ||| ||| || Sbjct 7233125 CCATACAGCTCCTCCAGCTCTGCTGCCTTCTCCTCCTCTCCTGCA 7233081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723709798240800