Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq769 143 3e-29 seq756 140 4e-28 >seq769 Length=8760791 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | ||||| ||| ||||||| || |||||| ||||| |||||||| || Sbjct 5350788 CCTCCCCTCAGACGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 5350729 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| |||| |||||||||||||| ||||| ||||| | |||||| |||| || Sbjct 5350728 AGGGTGCGCCCGTCTTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCGGGAGGA 5350669 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || || ||| |||||| ||| | || | | || ||||| | || || Sbjct 5350668 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCAACC 5350609 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| ||||| |||| || || |||||||| ||||| Sbjct 5350608 TCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5350562 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | |||| ||| ||||||| || ||| || ||||| |||||||| || Sbjct 5351016 CCTCCCCTGAGGCGCAGCACAAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 5350957 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| | || || ||||||||||| ||||| |||| | |||||| |||| || Sbjct 5350956 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGA 5350897 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||| ||||| |||||| ||| | || | | ||||| || | ||| || Sbjct 5350896 ATGCCCTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGTTCAACC 5350837 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 5350836 TCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 5350790 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | |||| |||||| |||| || ||| || || || |||||||| || Sbjct 5350560 CCTCCCCTGAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCAGAC 5350501 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| |||| || ||||||||||| || || |||| | |||||| |||| || Sbjct 5350500 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 5350441 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||| |||||| ||| | || | | ||||| || | || || Sbjct 5350440 ATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACC 5350381 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || | |||||||| ||||| ||||| || || |||||||| ||||| || Sbjct 5350380 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 5350331 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| ||||||| || |||||| ||||| |||||||| || || |||||| || Sbjct 5351232 CGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCG 5351173 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || |||| | |||||| || | || | || || ||| Sbjct 5351172 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTG 5351113 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||| ||| | || | | ||||| || | || || || | |||||| Sbjct 5351112 TCTTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 5351053 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| || || |||||||| ||||| Sbjct 5351052 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5351018 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || ||| || ||||| |||||||| || || || || | Sbjct 5351460 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA 5351401 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || |||||||||||||| ||||| ||||| | |||||| |||| || | || ||||| Sbjct 5351400 TCTTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCCTTA 5351341 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||| ||| | || | | || ||||| | || || || | |||||| Sbjct 5351340 TCTTGGATCTTAGCCTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATG 5351281 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| || || |||||||| ||||| Sbjct 5351280 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5351246 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | |||| |||||| |||| || |||||| ||||| |||||||| || Sbjct 5351701 GCCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 5351642 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || |||||| | || || ||||||||||| || || |||| | |||||| |||| || Sbjct 5351641 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGG 5351582 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || || ||||| |||||| ||| | | | | ||||| || | || || Sbjct 5351581 AATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAAC 5351522 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| || || || || || || |||||||| ||||| Sbjct 5351521 CTCAAGGGTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTGCAT 5351474 >seq756 Length=11697260 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| ||||||| || |||||| ||||| ||||||||||| || |||||| | Sbjct 3815641 CGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGTGCGCCCA 3815582 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||| || || || ||||| | ||| ||||| | || | | ||||||| Sbjct 3815581 TCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGTTGGTCAGGAGGGATTCCCTCCTTG 3815522 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | ||||| || | ||| || |||| |||||| Sbjct 3815521 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAACCTCCAAGGTGATG 3815462 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| ||||| || || || ||||| ||||| Sbjct 3815461 GTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 3815427 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | |||| ||| ||||| | || |||||| ||||| || |||||||| Sbjct 3815425 CCTCCCCTGAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAC 3815366 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| | || || || || ||||| ||||| |||| | ||| ||||| | || Sbjct 3815365 AGTGTGCGCCCATCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGTTGGTCAGGGGGG 3815306 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||||| |||||| ||| | || | | |||||||| | ||| || Sbjct 3815305 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCAACC 3815246 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||||||||| || |||| || || |||||||| ||||| Sbjct 3815245 TCCAAGGTGATGGTTTTACCTGTCAAGGTCTTCACAAAGATCTGCAT 3815199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565224184254240