Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq769 140 3e-28 seq756 134 1e-26 seq253 87.8 2e-12 >seq769 Length=8760791 Score = 140 bits (154), Expect = 3e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || ||||| ||||||||| | || || || ||| Sbjct 5350790 ATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAACCCAGT 5350849 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| ||||| |||| || Sbjct 5350850 GACACCATCGAGAACG-TGAAGGCCAAGATCCAAGACAAAGAGGGCATTCCTCCCGATCA 5350908 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| ||||| |||||||| || | ||||||||| |||||||| Sbjct 5350909 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 5350968 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || || | || |||||| | |||||||| Sbjct 5350969 CATCCAGAAAGAGTCCACCCTGCATCTTGTGCTGCG 5351004 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || || ||||||||| | || || ||| ||| Sbjct 5351474 ATGCAGATCTTTGTGAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCCAGT 5351533 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || |||| |||||||| || ||||| |||| || Sbjct 5351534 GACACCATTGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAG 5351593 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 5351594 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 5351653 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || ||||| |||||||||| | || || ||| Sbjct 5351654 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTCAGGGGTGGC 5351701 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 5351018 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 5351077 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| |||||||| || ||||| | || || Sbjct 5351078 GACACCATCGAGAACG-TGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCA 5351136 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| |||| ||||||||| |||||||| Sbjct 5351137 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAA 5351196 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || |||||| | |||||||| Sbjct 5351197 CATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCG 5351232 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| ||||||||| | || || ||| ||| | Sbjct 5350562 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 5350621 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| || ||||| || ||||| |||| || Sbjct 5350622 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCCGATCAG 5350681 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | ||| ||||| ||||| || |||| ||||||||| ||||||||| Sbjct 5350682 CAGAGGTTGATCTTCGCTGGCAAGCAGCTCGAAGACGGGCGCACCCTGTCTGACTACAAC 5350741 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || |||||| | ||||||||| |||| || || Sbjct 5350742 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGTCTGAGGGGAGG 5350788 Score = 120 bits (132), Expect = 3e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || || || ||||| ||||||||| | || || ||| | Sbjct 5350330 AAACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCC 5350389 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || |||| | | | | | || | || |||| ||||| || || ||||| |||| Sbjct 5350390 CAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCCGA 5350449 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||| |||| || | || ||||| |||||||| |||| ||||||||| ||||| Sbjct 5350450 TCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTA 5350509 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || || || | || ||||| |||||||||| Sbjct 5350510 CAACATTCAGAAAGAGTCCACTCTGCACCTGGTGCTGCG 5350548 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| | Sbjct 5351246 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 5351305 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | || |||| || || || || ||||| |||| || Sbjct 5351306 GATACCATTGAGAACG-TGAAGGCTAAGATCCAAGATAAGGAAGGCATTCCTCCCGATCA 5351364 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| ||||| ||||| || || | || ||||| |||||||| Sbjct 5351365 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTCGAAGATGGCCGTACCCTGTCTGACTACAA 5351424 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || || | || ||||| |||||||||| Sbjct 5351425 CATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCG 5351460 >seq756 Length=11697260 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||||||||||||| | || || || ||| Sbjct 3815427 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAAACCATCACCTTGGAGGTTGAACCCAGT 3815486 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || | || |||| ||||| |||||||| || | ||||| Sbjct 3815487 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCTGACCA 3815545 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| || | || | || || || |||||||| || | |||||| || ||||||||| Sbjct 3815546 ACAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGCACACTGTCCGACTACAA 3815605 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || |||||| | |||||||| | || ||||| Sbjct 3815606 CATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTCAGGGGCGG 3815653 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || || |||||||||||| | || || || ||| | Sbjct 3815199 ATGCAGATCTTTGTGAAGACCTTGACAGGTAAAACCATCACCTTGGAGGTTGAACCCAGC 3815258 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 3815259 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 3815317 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| |||| || | ||| |||||||| ||||| || | |||||| || |||||| || Sbjct 3815318 ACAGAGGCTGATCTTCGCTGGCAAACAACTGGAAGATGGGCGCACACTGTCCGACTATAA 3815377 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || ||| | |||||||| Sbjct 3815378 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCG 3815413 >seq253 Length=134823679 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||| ||||| ||| |||||| || |||||||| ||||| | || | Sbjct 117709159 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTTAATCCGGGCATCAGGCCCCTCTTCT 117709100 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | |||||||| || || || || ||||||||||||| ||| || || || ||||| | Sbjct 117709099 TCAGCCAAAAAATCGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCGAAGG 117709040 Query 133037 CCACCA 133042 | |||| Sbjct 117709039 CAACCA 117709034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500160220654080