Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq621 95.1 5e-14 >seq621 Length=54019043 Score = 95.1 bits (104), Expect = 5e-14 Identities = 168/243 (69%), Gaps = 14/243 (6%) Strand=Plus/Minus Query 451898 GAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGT----C 451953 || |||||||| || || || || || || |||||||| || ||| | || || | Sbjct 48090171 GAGATTGTGCTCGTGGGGGGCTCCACTCGTATTCCTAAGATCCAAAAGTTGCTGCAGGAC 48090112 Query 451954 TTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATA 452013 ||||| | || ||| | || |||||| | ||||| |||||||| ||||| || Sbjct 48090111 TTCTTCAAT----GGCAAAGAGCTCAACAAGAGCATCAATCCAGATGAAGCAGTTGCTTA 48090056 Query 452014 TGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGA---TGAAAAATTAGGAGA 452070 ||||||||| || ||||||||||| || | || ||| | |||||| | ||| Sbjct 48090055 TGGTGCTGCTGTGCAAGCAGCTATCCTCATGGG---AGACAAGTCTGAAAACGTGCAAGA 48089999 Query 452071 TATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGAT 452130 | | || | | ||||| || || || || || || | || |||||||||||| |||| Sbjct 48089998 TCTGCTCCTGTTGGATGTCACCCCCCTGTCCCTGGGCATCGAGACAGCTGGTGGAGTGAT 48089939 Query 452131 GAC 452133 ||| Sbjct 48089938 GAC 48089936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975667468449296