Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq621 145 6e-29 seq569 96.9 3e-14 >seq621 Length=54019043 Score = 145 bits (160), Expect = 6e-29 Identities = 902/1437 (63%), Gaps = 22/1437 (2%) Strand=Plus/Plus Query 517257 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 517316 ||||| | || || || |||||||| ||||| | ||| || ||||| || || ||||||| Sbjct 48089697 CGGCACTGACGTTCAGGATACCATTAGCATCTATATCGAAAGTGACCTCGATCTGAGGGA 48089756 Query 517317 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 517376 | || | | || || ||||| || | | ||| | ||||| || || || | Sbjct 48089757 CTCCACGGGGTGCTGGGGGGATGCCCGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCCT 48089816 Query 517377 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGA-TAGTAACTACAGTT-TGATTATCTGA 517434 | || | | ||||| || | | |||| ||| | | ||| || || ||||| Sbjct 48089817 TTGTCATAGCCCTCTCACCTTCATACACCTGGACTAGGACG--CTGTTCTGGTTGTCTGA 48089874 Query 517435 ATAAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATAT 517493 || || || || |||| ||| ||| ||||| || ||||| | | || | | Sbjct 48089875 GTAGGTGGTGAAGG-TCTGCGTTTGTTTGGTGGGAATGGTGGTGTTACGCTTGATGAGAG 48089933 Query 517494 TGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA 517553 |||||| | ||||| ||||| || | || || || || || |||||||| | |||| Sbjct 48089934 CGGTCATCACTCCACCAGCTGTCTCGATGCCCAGGGACAGGGGGGTGACATCCAACAGGA 48089993 Query 517554 CAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCAC 517613 | || ||| | |||||| | | || | || ||||||||||| | |||||||| Sbjct 48089994 GCAGATCTTGCACGTTTTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCAC 48090053 Query 517614 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 517673 |||| ||||| |||||||| ||||| | | | || || | ||| |||||||| || | Sbjct 48090054 CATAAGCAACTGCTTCATCTGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGT 48090113 Query 517674 -TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 517732 || | || || | | |||||||||||||| || || || || | ||||| || Sbjct 48090114 CCTGCAGCAACTT-TTGGATCTTAGGAATACGAGTGGAGCCCCCCACGAGCACAATCTCC 48090172 Query 517733 TGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCC 517792 || | ||| ||||| || || | ||| | | || || || || || || Sbjct 48090173 TGGATCTGGCCCTTATCGAGCTTGGCATCTCGCAGCGCCTTCTCCACTGGCTCCAGGGTA 48090232 Query 517793 GCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA 517852 | | || | || | | || || || || || | ||| | | | | || Sbjct 48090233 CCACGGAAAAGATCAGCATTGAGCTCCTCAAAGCGGGCACGAGTGATGGAGGTGTAGAAA 48090292 Query 517853 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 517912 ||||| || || || | || |||| ||||| | | ||| || ||||| || | | Sbjct 48090293 TCAATGCCCTCAAAGAGGGAGTCAATCTCAATGCTGGCTTGCGTGGAAGAGCTCAGAGTA 48090352 Query 517913 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 517970 || || || | ||||| ||||| | || | | | || | ||| |||| | | Sbjct 48090353 CGCTTCGCCCTCTCACAAGCTGTACGCAGCCGCCTCACTGC--TCGCTTATTGCCAGCAA 48090410 Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATC 518028 || || | || | |||||| ||||| |||| ||| | || | ||| || || Sbjct 48090411 TGTCACGCTTGTGCTTACGCTTGAACTCTTC--CACAAAATGGTTCACCATACGGTTGTC 48090468 Query 518029 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 518088 ||| || || || |||| | || | || | || | | || | || | ||||| Sbjct 48090469 AAAGTCCTCCCCACCCAGGTGGGTGTCCCCAGCTGTGGACTTCACCTCAAAGATGCCATC 48090528 Query 518089 TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 518148 || | | | || | |||||| || || || |||| ||||| || || ||||| Sbjct 48090529 CTCGATGGTAAGAATGGACACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACATT 48090588 Query 518149 CATTTCTTTGTCTTGG------TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 518202 | | ||| | || || || || | ||||| |||| ||||||||| || || Sbjct 48090589 CTTCTCTCCAGCCCGGGTACCTTTCTTGTCCAAGCCATAGGCAATAGCAGCAGCCGTGGG 48090648 Query 518203 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 518262 || || ||||| | || || ||||| |||| || | || |||||||| ||||| || Sbjct 48090649 CTCGTTGATAATACGCATCACGTTAAGGCCAGTGATGGTACCAGCATCTTTGGTGGCCTG 48090708 Query 518263 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACC 518322 | || || || || || || ||||| || || ||||| |||| ||| | ||| || Sbjct 48090709 GCGCTGGGAGTCATTGAAGTAAGCAGGCACTGTGATAACAGCATTCTGTACCTTTTTCCC 48090768 Query 518323 AATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 518382 | || || || | | ||||| || | | | ||| || || | || || Sbjct 48090769 CAGGTAGGCCTCAGCAATCTCCTTCATCTTGGTGAGCACCATGGAGCTGATCTCCTCCGG 48090828 Query 518383 GGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATT 518442 | | | ||| || || || |||| | | || || ||| |||| Sbjct 48090829 GAAGAAGGTCTTCATCTCTCCTTTGTACTCCACTTGCACCTTGGGCTTGCCACCCTCATT 48090888 Query 518443 AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCT 518502 | || || ||||||| ||||| || || || || | |||| | | | | | Sbjct 48090889 CACCACACGGAAGGGCCAGTGCTTCATGTCCGACTGCACCGTGGGGTCGTCATACTTGCG 48090948 Query 518503 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTT 518562 || || | || || |||||||| || || ||||| || || || || |||| | || Sbjct 48090949 GCCGATGAGACGCTTGGCATCAAAGATGGTGTTGGTGGGGTTCATGGCCACTTGGTTCTT 48091008 Query 518563 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 518622 ||| ||||| || || ||| | || || || ||||| | ||||| || || ||||| Sbjct 48091009 GGCAGCATCCCCGATGAGACGCTCCGTATCGGTAAAGGCCACATAGCTGGGCGTGGTGCG 48091068 Query 518623 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 518679 || || || || || || || || || ||||| |||| || | ||||| ||||| Sbjct 48091069 GTTTCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAGACACCCACACA 48091125 >seq569 Length=82189922 Score = 96.9 bits (106), Expect = 3e-14 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| || || || | |||||||| ||||| || |||||| | ||| | | | ||||| Sbjct 30619448 TGTTGTGGCTACGGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 30619507 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 |||||| || || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 30619508 TCATTACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGAAGAGCTGGTCG 30619567 Query 367113 TGATGG 367118 |||||| Sbjct 30619568 TGATGG 30619573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780722557932472