Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq621 288 1e-72 seq785 168 8e-37 >seq621 Length=54019043 Score = 288 bits (318), Expect = 1e-72 Identities = 1033/1600 (65%), Gaps = 38/1600 (2%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| || || || || ||||| ||||| ||||| || ||||| | Sbjct 48089578 TTCATCCTCTGCTTTGTATTTCTCTGCTTCTTGCACCATACGGTCAATATCATCTTT-GC 48089636 Query 6628 TAAT-CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTT 6686 ||| | ||||| ||||| || || || ||||| | || || | ||| || Sbjct 48089637 TAAGGCGACCCTTGTCATTGGTGATGGTTATCTTGTTCTCCTTCCCTGTACTCTTGTCCA 48089696 Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 | ||||| || |||| |||||||| ||||| | |||||| | || | || || || Sbjct 48089697 CGGCACTGACGTTCAGGATACCATTAGCATCTATATCGAAAGTGACCTCGATCTGAGGGA 48089756 Query 6747 TACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806 || | ||||| | || || ||||||| ||||| | || || || |||| ||| Sbjct 48089757 CTCCACGGGGTGCTGGGGGGATGCCCGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCCT 48089816 Query 6807 TCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGT-TGATTATCTTGT 6865 | | | | | ||||||||||| || | | | || || | | || || ||| Sbjct 48089817 TTGTCATAGCCCTCTCACCTTCATACACCTGGACTAGGAC-GCTGTTCTGGTTGTCTGAG 48089875 Query 6866 GCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGG 6925 || | |||| | || || || | ||||| || || || | | || | | | Sbjct 48089876 TAGGTGGTGAAGGTCTGCGTTTGTTTGGTGGGAATGGTGGTGTTACGCTTGATGAGAGCG 48089935 Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| | ||||| || |||| || || ||||| || || || ||||| || | | Sbjct 48089936 GTCATCACTCCACCAGCTGTCTCGATGCCCAGGGACAGGGGGGTGACATCCAACAGGAGC 48089995 Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || ||||| || ||| | || ||| | | ||| || ||||| || | || || Sbjct 48089996 AGATCTTGCACGTTTTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCACCA 48090055 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || || ||||| || || || | || || || ||||| || || || | ||| Sbjct 48090056 TAAGCAACTGCTTCATCTGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 48090115 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 | || | ||| || || || || || || || || || || | || || || | Sbjct 48090116 TGCAGCAACTTTTGGATCTTAGGAATACGAGTGGAGCCCCCCACGAGCACAATCTCCTGG 48090175 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA---TACAT 7222 | | ||||||| ||| | ||||| || | || || || || |||| ||| Sbjct 48090176 ATCTGGCCCTTATCGAGCTTGGCATCTCGCAGCGCCTTCTCCACTGGCTCCAGGGTACC- 48090234 Query 7223 TTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAA 7282 |||||| | || | || |||||||| || ||||| || ||||| || |||||| Sbjct 48090235 --ACGGAAAAGATCAGCATTGAGCTCCTCAAAGCGGGCACGAGTGATGGAGGTGTAGAAA 48090292 Query 7283 TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC--- 7339 |||| ||| || | | || ||||| |||||| | | ||| ||| ||||| | Sbjct 48090293 TCAATGCCCTCAAAGAGGGAGTCAATCTCAATGCTGGCTTG---CGTGGAAGAGCTCAGA 48090349 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| || | |||||| || || || | || | | || ||| || || | | Sbjct 48090350 GTACGCTTCGCCCTCTCACAAGCTGTACGCAGCCGCCTCACTGCTCGCTTATTGCCAGCA 48090409 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || ||| || ||||| || |||||||| || || | | | || Sbjct 48090410 ATGTCACGCTTGTGCTTACGCTTGAACTCTTCCACAAAATGGTTCACCATACGGTTGTCA 48090469 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || || ||||||| ||| || ||||| || || | || || |||||||| || | Sbjct 48090470 AAGTCCTCCCCACCCAGGTGGGTGTCCCCAGCTGTGGACTTCACCTCAAAGATGCCATCC 48090529 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 || ||| | | | || |||||||| || || || |||| |||||| ||||| || ||| Sbjct 48090530 TCGATGGTAAGAATGGACACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACATTC 48090589 Query 7580 GTATCGTCGTCTTTG------TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | || | | | ||||| || | || || || ||||| || ||||| || Sbjct 48090590 TTCTCTCCAGCCCGGGTACCTTTCTTGTCCAAGCCATAGGCAATAGCAGCAGCCGTGGGC 48090649 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || |||||||| | ||| ||||||| || || | |||||||| || || || Sbjct 48090650 TCGTTGATAATACGCATCACGTTAAGGCCAGTGATGGTACCAGCATCTTTGGTGGCCTGG 48090709 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || || || || || ||||| || || || || | || || | | || || || || Sbjct 48090710 CGCTGGGAGTCATTGAAGTAAGCAGGCACTGTGATAACAGCATTCTGTACCTTTTTCCCC 48090769 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCC 7813 || || | || || || || ||||| ||||| || ||||| || ||||| || | Sbjct 48090770 AGGTAGGCCTCAGCAATCTCCTTCATCTTGGTGAGCACCATGGAGCTGATCTCCTCCGG- 48090828 Query 7814 GCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC 7872 | | | || ||| | || || || | || |||| | | |||| || || |||| Sbjct 48090829 GAAGAAGGTCTTCATCTCTCCTTTGTACTCCACTTGCACCTTGGGCTT----GC--CACC 48090882 Query 7873 GGGGATAACCTTAT---ACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAA 7929 | ||| | | | ||| | ||||| || || ||| |||| | | Sbjct 48090883 CTCATTCACCACACGGAAGGGCCAGTGCTTCATGTCCGACTGCACCGTGGGGTCGTCATA 48090942 Query 7930 CTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTG 7989 ||| | ||||| |||||||| |||||||| | ||||| ||||||||||||| ||| Sbjct 48090943 CTTGCGGCCGATGAGACGCTTGGCATCAAAGATGGTGTTGGTGGGGTTCATGGCCACTTG 48091002 Query 7990 GTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGG 8049 |||||| || || |||||||| ||||| || || || ||||| || || || | ||| Sbjct 48091003 GTTCTTGGCAGCATCCCCGATGAGACGCTCCGTA---TCGGTAAAGGCCACATA-GCTGG 48091058 Query 8050 G-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGC 8108 | || || || || || |||||||| || || || || || | | | || |||| | Sbjct 48091059 GCGTGGTGCGGTTTCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAGACAC 48091118 Query 8109 CGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 | || || |||||||| || || | || || ||||| || Sbjct 48091119 CCACACAGGAATACGTGGTGCCCAGGTCGATGCCGATGGC 48091158 >seq785 Length=5496777 Score = 168 bits (186), Expect = 8e-37 Identities = 365/543 (67%), Gaps = 6/543 (1%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| || || || | || |||| ||||| || || || Sbjct 2582758 GCACCATAAGCCACGGCTTCATCAGGATTGATGCTCTTGTTCAACTCTTTGCCATTGAAG 2582699 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | || | || || ||||| || ||||| || || || || || |||| || || Sbjct 2582698 AAGTCTTGCAGCAGTTTCTGAATCTTTGGGATGCGGGTAGAACCCCCAACCAGCACAATG 2582639 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | | | || || || | ||| | || | || | || || ||||| || | Sbjct 2582638 TCGTGGATCTGTGACTTGTCCAGCTTGGCATCCCTCAGGGCCTTCTCCACAGGATCAAGG 2582579 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| ||| | ||| || ||||| || || | || |||||||| ||| Sbjct 2582578 GTGCCACGGAACAGGTCAGCATTCAGCTCTTCAAAGCGAGCTCTCGTGATGGATGTGTAG 2582519 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| || || || | ||||| |||||||| | | ||||| |||| || | Sbjct 2582518 AAGTCAATACCCTCATAGAGAGAATCGATTTCAATACTGGCTTGTGTGCTCGACGACAGG 2582459 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| || ||||| || || || | ||||||| || | | ||| | Sbjct 2582458 GTACGCTTTGCACGTTCACATGCAGTACGGAGGCGACGAACTGCTCTCTTGTTCTCACTG 2582399 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAA 7456 || |||||||| || || ||||| || || || |||||| | || | | | | Sbjct 2582398 ATGTCTTTCTTGTGCTTGCGTTTGAATTCAGCAATGAAGTGGTTGACCATGCGGTTG--- 2582342 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || |||||||| ||||||||||| ||||| || || || | ||| || |||||||| || Sbjct 2582341 TCAAAATCTTCTCCACCCAAGTGAGTATCACCTGCAGTGGATTTCACCTCAAAGATGCCA 2582282 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| | | | || |||||||| || ||||| || ||||| ||||| || ||| Sbjct 2582281 TCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCGAAAATAAGAACG 2582222 Query 7577 TTC 7579 ||| Sbjct 2582221 TTC 2582219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635116826410080