Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq769 111 1e-19 seq756 93.3 3e-14 >seq769 Length=8760791 Score = 111 bits (122), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||| | | || |||| ||| | ||| |||||||||||||| ||||| || Sbjct 5350560 CCTCCCCTGAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCAGAC 5350501 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || |||||||| || || ||||| || || | ||||| || | || Sbjct 5350500 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 5350441 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || |||||||| ||||| || || || || || | |||| || ||||| Sbjct 5350440 ATGCCTTCCTTGTCTTGGATCTTGGCCTTCAC--ATTCTCGATGGTGTCACTGGGCTCAA 5350383 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || | ||| ||||| || || || || |||||||||||||||||||| || Sbjct 5350382 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 5350331 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || |||| ||| | ||| || ||||| ||||| ||||| || Sbjct 5351700 CCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 5351641 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || || ||||| || || | ||||| || | || Sbjct 5351640 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 5351581 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || ||||| ||||| || || | | || | |||| || |||||| Sbjct 5351580 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACC 5351521 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || || ||||| |||||||||||||||||||| Sbjct 5351520 TCAAGGGTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTGCAT 5351474 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || | || |||||||| || || ||||| Sbjct 5351208 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAG 5351149 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| || | || | || || ||||| ||||| || ||| Sbjct 5351148 ATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTC 5351089 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || |||||| || | ||| ||||| || || || || ||||||||| Sbjct 5351088 TCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 5351029 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 5351028 AAGATCTGCAT 5351018 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || ||| | || |||| |||||||| || || || || Sbjct 5350980 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAG 5350921 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| || | || | ||||| ||||| ||||| || ||| Sbjct 5350920 ATCAGCCTCTGCTGATCGGGAGGAATGCCCTCTTTGTCTTGGATCTTGGCCTTCACGTTC 5350861 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||||| || | ||| ||||| || || || || || ||||| Sbjct 5350860 TCGATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACG 5350801 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 5350800 AAGATCTGCAT 5350790 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || |||| ||| | ||| |||||||| ||||| ||||| || Sbjct 5351472 CCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 5351413 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| || ||||| || || || || || | | ||||| || | || Sbjct 5351412 AGGGTACGGCCATCTTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCGGGAGGA 5351353 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || ||||| || ||| | || | || | || |||||| Sbjct 5351352 ATGCCTTCCTTATCTTGGATCTTAGCCTTCACGTTCTCAATGGTATCGCTGGGCTCAACC 5351293 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || || || || |||||||||||||||||||| Sbjct 5351292 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5351246 >seq756 Length=11697260 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||||||||| || || | || |||| ||||| ||||| || || || Sbjct 3815389 TCCTTCTGGATGTTATAGTCGGACAGTGTGCGCCCATCTTCCAGTTGTTTGCCAGCGAAG 3815330 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | || ||||| | || | ||||||||||| ||||| || ||| Sbjct 3815329 ATCAGCCTCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 3815270 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || ||||| || | ||| |||||||| || || | ||||||||| Sbjct 3815269 TCAATGGTGTCGCTGGGTTCAACCTCCAAGGTGATGGTTTTACCTGTCAAGGTCTTCACA 3815210 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 3815209 AAGATCTGCAT 3815199 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || |||| |||||||| || || ||||| Sbjct 3815617 TCCTTCTGGATGTTGTAGTCGGACAGTGTGCGCCCATCTTCCAGCTGCTTCCCAGCAAAG 3815558 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | || ||||| | || | ||||||||||| ||||| || ||| Sbjct 3815557 ATCAACCTCTGTTGGTCAGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 3815498 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||||| || | ||| |||||||| || || || ||||| || Sbjct 3815497 TCAATGGTGTCACTGGGTTCAACCTCCAAGGTGATGGTTTTGCCAGTCAGGGTCTTGACG 3815438 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 3815437 AAGATCTGCAT 3815427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324625639578336