Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq450 114 1e-20 seq1 84.2 2e-11 >seq450 Length=100941466 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | ||||||||||| || | |||||||| | |||||||| | Sbjct 88063154 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAACCTCTTTTCT 88063095 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || || || ||||| || ||||||||||| || ||||| ||||||||||| | Sbjct 88063094 TCAGCCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATG 88063035 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| | |||||| Sbjct 88063034 CTACTACACGTTCTCC 88063019 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||||||| |||| || || | | |||||||||||||||||| |||||||| || || Sbjct 88061987 ATCTTTAATGTATGTGTCAATGAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 88061928 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| || || || ||||| | ||||||||| || || ||||| Sbjct 88061927 AATCTGGAAGCCATAGAAACAACGTGCTTCTGTGATTTGCACTTC 88061883 >seq1 Length=175656249 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/147 (72%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 47906 TACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGT 47965 |||||||| | | ||||| | | |||||| | || || || | |||||||| || Sbjct 174294479 TACCTCATCTTTGCTGGTATACTCCACTATTTCTGTGCAGAGGTTGCTGCATTTGATGGT 174294538 Query 47966 ACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGT 48025 ||||| || || ||||| | |||| || | ||| ||||| ||||| ||||||| Sbjct 174294539 CCCCAAGTTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGTGT 174294598 Query 48026 TCCAGTTTCTATCTGAGATTCAATGAT 48052 ||||| ||| |||| ||||||||||| Sbjct 174294599 GCCAGTCTCTGTCTGCGATTCAATGAT 174294625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562094662963680