Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq785 125 6e-23 seq621 93.3 3e-13 seq769 87.8 1e-11 >seq785 Length=5496777 Score = 125 bits (138), Expect = 6e-23 Identities = 111/139 (80%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||| | ||||||||||| |||||||||||||| || || || || || ||||||| Sbjct 2581970 ATGCTGTAGTCACTGTACCAGCCTATTTTAATGACTCCCAGCGCCAGGCCACAAAAGATG 2582029 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||||| || |||||||| || || || |||||||| || || |||||||| Sbjct 2582030 CTGGAACCATTGCAGGGCTTAATGTACTGCGAATCATCAATGAGCCAACAGCTGCTGCTA 2582089 Query 550518 TTGCATATGGACTTGATAA 550536 | || ||||| || ||||| Sbjct 2582090 TAGCCTATGGTCTGGATAA 2582108 Score = 96.9 bits (106), Expect = 3e-14 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 549970 AGATATAATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGT 550029 ||| | |||||| || | |||| | ||||| ||| | |||||||| ||| ||||| Sbjct 2581240 AGACAAAATGTCGAAGGGACCAGCTGTTGGTATCGATCTCGGAACCACCTATTCCTGTGT 2581299 Query 550030 TGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTAC 550089 |||||| | ||| |||| || || ||||| || |||||||| || || ||||| || || Sbjct 2581300 TGGTGTGTTCCAACATGGGAAGGTGGAAATCATCGCCAATGACCAGGGGAACAGGACCAC 2581359 Query 550090 TCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA 550149 ||| || || ||||||| || || || || ||||||| || || || | || Sbjct 2581360 GCCAAGCTACGTCGCTTTCACAGATACAGAGAGGTTGATTGGTGACGCTGCCAAGAACCA 2581419 Query 550150 AG--CCACTGGTAATCCTACCAATAC 550173 || || || ||||| |||||||| Sbjct 2581420 AGTTGCAATG--AATCCCACCAATAC 2581443 Score = 86.0 bits (94), Expect = 5e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||| |||||||| | || ||||| || |||||||| || || ||||| |||||| Sbjct 2583653 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 2583712 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||| || |||||||| ||||| ||||| Sbjct 2583713 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 2583744 >seq621 Length=54019043 Score = 93.3 bits (102), Expect = 3e-13 Identities = 354/546 (65%), Gaps = 11/546 (2%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || || | || ||||| ||| ||||| ||||| | || |||| ||| Sbjct 48091158 GCCATCGGCATCGACCTGGGCACCACGTATTCCTGTGTGGGTGTCTTCCAGCATGGCAAA 48091099 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || ||||| || || || ||| | || || || ||||| | || || Sbjct 48091098 GTGGAGATCATCGCCAACGACCAGGGAAACCGCACCACGCCCAGCTATGTGGCCTTTACC 48091039 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACC 550168 || || || | | | | || ||||| || || | |||| ||| || || || ||| Sbjct 48091038 GATACGGAGCGTCTCATCGGGGATGCTGCCAAGAACCAAGTGGCCA-TG--AACCCCACC 48090982 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 || || || |||||||| || ||| | || || | | | | | || | || || ||| Sbjct 48090981 AACACCATCTTTGATGCCAAGCGTCTCATCGGCCGCAAGTATGACGACCCCACGGTGCAG 48090922 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 | || |||||||| ||||| |||| | || |||| ||| || || | | || Sbjct 48090921 TCGGACATGAAGCACTGGCCCTTCCGTGTGGTGAATGAGGGTGGCAAGCCCAAGGTGCAA 48090862 Query 550289 GCTACTCATGAAGGATCTGTTAA-ACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347 | | ||||| | || || | ||| || || | || || ||||| | Sbjct 48090861 GTGGAGTACAAAGGAGAGATGAAGACCTTCTTC-CCGGAGGAGATCAGCTCCATGGTGCT 48090803 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGA-TGCAGTAA 550406 | || ||||| | | || || | | || || ||| ||| || ||| || | Sbjct 48090802 CACCAAGATGAAGGAGATTGCTGAGGCCTACCTGGGGAAA-AAGGTACAGAATGCTGTTA 48090744 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | || || || || || || |||||||| || || || || || ||||||||||| | Sbjct 48090743 TCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGTACCA 48090684 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 | |||| ||||| || | ||||||||||| || || || |||||||| |||| |||| Sbjct 48090683 TCACTGGCCTTAACGTGATGCGTATTATCAACGAGCCCACGGCTGCTGCTATTGCCTATG 48090624 Query 550527 GACTTG 550532 | |||| Sbjct 48090623 G-CTTG 48090619 >seq769 Length=8760791 Score = 87.8 bits (96), Expect = 1e-11 Identities = 155/224 (69%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 |||||| || || |||||||| ||||| ||| | ||| || ||||| |||| || Sbjct 5351239 CCTGAGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGACAGG 5351182 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | ||||| || || || || ||||| || || || ||||||||||||||||| Sbjct 5351181 GTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATG 5351122 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCG 563430 |||||||| ||||| || || || || ||| || || ||| || | | || Sbjct 5351121 CCTTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACCTCA 5351062 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | || || ||||| || || || || || || ||||| Sbjct 5351061 AGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5351018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029189596365880