Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq769 100 2e-16 >seq769 Length=8760791 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| || | | || | |||| |||| ||| Sbjct 5351676 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGC 5351617 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| | ||| |||||||| |||||||||||||| ||||| || || Sbjct 5351616 TTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTG 5351557 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| |||| | |||||| | || || ||||| |||| || || || || Sbjct 5351556 GCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTACCAGTG 5351497 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 5351496 AGGGTCTTCACAAAGATCTGCAT 5351474 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || ||||| || || ||||| || | | || | | || |||| ||| Sbjct 5350536 TGCAGAGTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGC 5350477 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| | ||| |||||||| ||||||||||| || ||||| || || Sbjct 5350476 TTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGGATCTTG 5350417 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| | || || ||||| |||| || ||||| || Sbjct 5350416 GCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTC 5350357 Query 101447 AAAGTTTTTACAAATATCTGCATGGTTAC 101475 | || || ||||| ||||||||| |||| Sbjct 5350356 AGGGTCTTCACAAAGATCTGCATGTTTAC 5350328 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || | ||| | || | ||| ||||| || || || || || ||||| || | Sbjct 5350788 CCTCCCCTCAGACGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 5350729 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | || || | ||||| || || || ||||| | ||| |||||||| ||| Sbjct 5350728 AGGGTGCGCCCGTCTTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGATCGGGAGGA 5350669 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||||||||| || || || || ||| | || | || || | || || Sbjct 5350668 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGCTGGGCTCAACC 5350609 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || ||||| || || || || ||||| |||||||| Sbjct 5350608 TCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5350562 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || ||||| || | | || | | |||| || | ||| Sbjct 5351448 TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCGAGCTGC 5351389 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||| | ||| |||||||| ||||||||||| |||||||| || || Sbjct 5351388 TTGCCAGCGAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCCTTATCTTGGATCTTA 5351329 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | || || | || || ||||| |||| || ||||| || Sbjct 5351328 GCCTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTC 5351269 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 5351268 AGGGTCTTCACAAAGATCTGCAT 5351246 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| || || || || || ||||| || | | || | | || |||| || Sbjct 5351221 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTG 5351162 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| |||| | ||| ||||| || |||||||||||||| ||||| || || Sbjct 5351161 CTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCTTGGATCTT 5351102 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || | || | |||||| | || || ||||| |||| || ||||| || Sbjct 5351101 GGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGT 5351042 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 5351041 CAGGGTCTTCACAAAGATCTGCAT 5351018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396268682758284