Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq808 120 6e-22 seq1 87.8 3e-12 >seq808 Length=67000979 Score = 120 bits (132), Expect = 6e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 ||| ||| ||||||| |||||||||||||| ||||| || ||||| || | ||||||||| Sbjct 47544603 CTTCAGCGCCTTCACCTTCTCCTCCAGCCGGGCGATCCGCTCCAGCTTCCTCCGGCGGCA 47544544 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| ||| || | ||||||||| || | ||| || |||||||| | ||| |||||| Sbjct 47544543 CTTGGAGGCCGCGATGCGGTTCCGAAGCCGCTTGCGCTCCGCCTTCAGGCGCTCCTGGCT 47544484 Query 241609 CTCCATGTCGATCGGAGAC 241627 |||| ||| | ||| ||| Sbjct 47544483 CTCCGCGTCCAGCGGCGAC 47544465 >seq1 Length=175656249 Score = 87.8 bits (96), Expect = 3e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 ||||||| |||||| || || || | ||| || || ||| ||||| |||| | | | Sbjct 174295746 ACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCACGCTGC 174295805 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || || || | ||| || | || ||||| |||||||||||| |||||||||| Sbjct 174295806 TCTTCTTTCCCGGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAGGTGCCACGGC 174295865 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||| |||||||||||| || || || |||| Sbjct 174295866 TCCAGGTAGATGGCAAAAGCCCCGGGTCTCT 174295896 Score = 86.0 bits (94), Expect = 1e-11 Identities = 122/170 (72%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 213173 GTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGT 213232 ||| || || |||||||| |||||||| ||| ||| | ||| ||| | || || ||||| Sbjct 174292375 GTAAGGCCCTTGCTCCTTCGCCAGCTCACAGCTCGCTTCCAGAGCACCATAATAAATGGT 174292434 Query 213233 TTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTG--AAGGGCATCATCATG 213290 ||||| |||| | ||| || || ||||| || || | ||||| | | |||| Sbjct 174292435 CTCAAAGATCTGCTGGTTCAGGCGCTGCGCCTCAGG--ACTTTCAAAGGGGAACCTCATC 174292492 Query 213291 CGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTG 213340 | ||| |||||||||| ||||| || || ||||||||||| | ||| Sbjct 174292493 AGGATGAAGGCATCAGCCAGGCCCTGCACACCAATGCCGATGGGACGGTG 174292542 Score = 84.2 bits (92), Expect = 4e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||||| || || ||||| |||||||||||| |||||| |||| |||||| || Sbjct 174294495 GTATACTCCACTATTTCTGTGCAGAGGTTGCTGCATTTGATGGTCCCCAAGTTCTGCTGA 174294554 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| ||| || ||||| |||||||| || | || |||||| ||| Sbjct 174294555 TTGCTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGTGTGCCAGTCTCTGTCTGC 174294614 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCAC 213688 || | | || | |||||| | | |||||| ||||| Sbjct 174294615 GATTCAATGATTGCGTACCAGAGCTGCTGGGCCTTCACCAC 174294655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931509371950080