Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1 104 4e-17 >seq1 Length=175656249 Score = 104 bits (114), Expect = 4e-17 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 222011 CTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGA 222070 ||||| || |||| || || |||| ||||||||| || || ||||| || || Sbjct 174295725 CTCCACACCTGGTTGGTTTCAACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAG 174295784 Query 222071 AAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCA 222130 || || ||||||| |||||||| || ||| |||| ||| | | || | ||||||| Sbjct 174295785 AAAAGGTCTCTGGCACGCTGCTCTTCTTTCCCGGTGTTCTTCTTTAAGTCAAGAAACTCA 174295844 Query 222131 AAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 || ||||| ||||||||||||||| |||| ||| | ||| ||||||| || Sbjct 174295845 AAGATGTCCAGGTGCCACGGCTCCAGGTAGATGGCAAAAGCCCCGGGTCTCT 174295896 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 221732 ACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTC 221791 ||||| || ||| ||||||||| | || ||||| |||||||||||||| ||||||||| Sbjct 174294480 ACCTCATCTTTGCTGGTATACTCCACTATTTCTGTGCAGAGGTTGCTGCATTTGATGGTC 174294539 Query 221792 CCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCG 221851 |||| || | ||||| ||| | ||| || ||| ||||| ||||| | || | Sbjct 174294540 CCCAAGTTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGTGTG 174294599 Query 221852 CCAGTCTC 221859 |||||||| Sbjct 174294600 CCAGTCTC 174294607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928821439553280