Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq785 129 4e-24 seq769 86.0 4e-11 >seq785 Length=5496777 Score = 129 bits (142), Expect = 4e-24 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 |||||| |||| ||| | ||||| ||||| ||||||||||| || || || || || || Sbjct 2581963 GTAACTAATGCTGTAGTCACTGTACCAGCCTATTTTAATGACTCCCAGCGCCAGGCCACA 2582022 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| |||| |||||||| |||||||| | || || || ||||| |||||||| Sbjct 2582023 AAAGATGCTGGAACCATTGCAGGGCTTAATGTACTGCGAATCATCAATGAGCCAACAGCT 2582082 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || | || |||||||| |||||||| Sbjct 2582083 GCTGCTATAGCCTATGGTCTGGATAAGAA 2582111 Score = 98.7 bits (108), Expect = 6e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| |||||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 2583653 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 2583712 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| || || ||||| ||||| ||||| Sbjct 2583713 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 2583744 Score = 96.9 bits (106), Expect = 2e-14 Identities = 219/327 (67%), Gaps = 2/327 (1%) Strand=Plus/Plus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||| ||||||||||| ||||| | || || || || ||| | | | ||||| | Sbjct 2582433 ACTGCATGTGAACGTGCAAAGCGTACCCTGTCGTCGAGCACACAAGCCAGTATTGAAATC 2582492 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 |||||||| | ||| || ||||| | | || || || || ||| |||||||| Sbjct 2582493 GATTCTCTCTATGAGGGTATTGACTTCTACACATCCATCACGAGAGCTCGCTTTGAAGAG 2582552 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| || || | || |||| || || || | | || || ||| | Sbjct 2582553 CTGAATGCTGACCTGTTCCGTGGCACCCTTGATCCTGTGGAGAAGGCCCTGAGGGATGCC 2582612 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 || || ||||| ||||| |||| || ||||| || || || ||||| || | || ||| Sbjct 2582613 AAGCTGGACAAGTCACAGATCCACGACATTGTGCTGGTTGGGGGTTCTACCCGCATCCCA 2582672 Query 475736 AA-AATAAGAGAAATGCTTTCATCATATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAA 475794 || | | ||| || |||| | | || ||||| ||| |||| || | || | || Sbjct 2582673 AAGATTCAGA-AACTGCTGCAAGACTTCTTCAATGGCAAAGAGTTGAACAAGAGCATCAA 2582731 Query 475795 TCCTGATGAAGCTGTTGCATATGGAGC 475821 |||||||||||| || || ||||| || Sbjct 2582732 TCCTGATGAAGCCGTGGCTTATGGTGC 2582758 >seq769 Length=8760791 Score = 86.0 bits (94), Expect = 4e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| || ||||| |||||||| || || | || ||||| |||||||| ||||||||| Sbjct 5350488 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTG 5350429 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 ||||| ||||| || ||| || || || ||| || | | |||||||| || Sbjct 5350428 TCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 5350369 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| || || || || Sbjct 5350368 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTG 5350337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268092895557776