Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq808 244 1e-59 seq725 217 2e-51 >seq808 Length=67000979 Score = 244 bits (270), Expect = 1e-59 Identities = 654/992 (66%), Gaps = 11/992 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || | | |||| ||||| || || || |||||||| || || | Sbjct 33630419 TGTGTCGCAAATATCCTTCCAAACATTTCACAGCAAAAGGATCAACGTCAGTATCAAACT 33630360 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| | || ||||||| || |||||| ||| |||| Sbjct 33630359 TATTAGCAAAGAAGTGGTG---GTTTCGCAGCATCCAGTTCAGGTCTCCTACCCCAAACA 33630303 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | || || || ||||| || ||||| | || ||||| | ||| | Sbjct 33630302 CACAGACAGATCGAACATGAACTCCATTGCATGGTGGGTAGGGCGCACCTTTAGACACAT 33630243 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | ||||| ||||||||||||| ||||||||||| | || | |||||| || || | Sbjct 33630242 CTCCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAAACATCAT 33630183 Query 160285 ATTTGTACATCAGGGGAA-CGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || || ||| | ||||| || ||| | || || | ||| | || ||||| Sbjct 33630182 ACTTGT-CACTAGAAGAAACAGCACCTGGGACGTCAGGGATTCTCTGAATTGTTGCCCAT 33630124 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 |||| || ||||||||||| ||||| || | ||| || || || | |||| ||| Sbjct 33630123 AGGTACTCATCGGGGCTGTAAGTGTCTTTTGCCCACTCAATAAATTTGAGGATTTTGCTG 33630064 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | | || | || | |||| | || |||||||| || ||||| || || Sbjct 33630063 TTTTCTAATACATATTCTACAAATCTTCTGCTAACTACAAAGTAGGCACTGCCAGAAAAA 33630004 Query 160464 ATCG--GTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTT 160521 || | |||| | | ||| || | |||||| ||| ||||| ||| || | Sbjct 33630003 ATTGGAGTATTG--AGAGGTGGTAGTTGTTTGTCTATACCTGTGTTTTTCACTTTACCAT 33629946 Query 160522 TCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCT 160581 || | | | | | || |||||||| || || | ||||| ||| || | Sbjct 33629945 CAACAATCTCATAATGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCTGTTT 33629886 Query 160582 CTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGA 160641 | | ||||| |||| | || | ||| | | || || || || |||| ||||||| Sbjct 33629885 CCAAGCTGTTTTCACCTTTAAGAGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTGA 33629826 Query 160642 GCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCA 160701 |||||||| | || || | |||||| | || ||||| || | || | | Sbjct 33629825 TAGGAAAGTCCATGCCACAGAGGTTTATTAGATATTTCCAGTTTGAACTTCTTCTATAGA 33629766 Query 160702 GGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCT 160761 | || ||||||| ||||||||||||||||| | |||||| ||||| ||||| || ||| Sbjct 33629765 GATCTTTCATGCAGTTAATATCTGCCTGCACCCTGCTCCATGAAGCATACACAACACTCT 33629706 Query 160762 CTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAA 160821 ||| | |||| | ||||| ||||| ||||| || || || || ||| | | | | Sbjct 33629705 CTAACTGGCTGGATATGAAGACATTATCAAAACAGGAAACTATCCCTTTCACAG-CTGTA 33629647 Query 160822 AGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAG 160880 | || | || | | |||| ||| || || | ||| || | |||||||| || ||| Sbjct 33629646 AAAAAAGATTCTGGAGATTTTCTGTCAACATGGATGCAGTAAAAATTCTGAGGAGCATAG 33629587 Query 160881 ATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCT 160940 || | || || | || || | |||||| || || |||| | ||| || ||||| || Sbjct 33629586 ATTGATCTCAGAAGTCTGTCAAGCATCTCAATTTTGTGATAAACCACTATTGAGTAAGCA 33629527 Query 160941 ATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATA 161000 |||||||| || | || || | || || | | | | ||| || | | | ||| | Sbjct 33629526 ATCGGAAATTCTGCTTCTTCACTGCTGAGAGGTTCCATAATGTATTTCCTCATTTTGGTG 33629467 Query 161001 AAATAATCACAATCCCGCGTCATGTTGATATA 161032 ||| | |||| || |||||||| ||||| Sbjct 33629466 AAAGAGGCACAGTCTGTTGTCATGTTTATATA 33629435 >seq725 Length=18483700 Score = 217 bits (240), Expect = 2e-51 Identities = 620/942 (66%), Gaps = 36/942 (4%) Strand=Plus/Plus Query 160034 GATCAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTC 160093 || ||||| |||| ||||| || || ||||| |||| |||| |||| || || Sbjct 4487576 GAGCAGCGCCTTGTGGCGCAGGTGGCTCTCGAGACACTGGATGGCGGCATCGTCCACTTC 4487635 Query 160094 TTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCC 160153 |||||| || || || || |||||||| | || || ||||| |||||| || Sbjct 4487636 GGAGTCGAACTTGTTGGCCAAGAGATGGTGC---TGCTCCAGCATCCACGCCACGTCCCC 4487692 Query 160154 GGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCC 160213 || |||| | | ||||||| || | |||| |||| |||||||| | ||||| Sbjct 4487693 GGCCCCGTAGATGCAGACGCCGCGCTGGAAGCGGCCGGTGCAGGGCGGGTAGGGCGCTCC 4487752 Query 160214 TTTCGCCACGTCAC-CTTCGTAG-TACTGCCACTTCACAAACCTGGCTATCGCCTGCATG 160271 || | ||| | | | || ||||||||||| || | | || | ||| | |||| Sbjct 4487753 G--CGGCTCGTGTCGCCGCTCAGGTACTGCCACTTGACCAGGCGGGGCAGCGCGTTCATG 4487810 Query 160272 TCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGT 160331 ||||| ||| | | |||| | |||| ||||| ||||| ||||||||| || | Sbjct 4487811 TCGGACATGTGGAACTTGTCGTTGTGGGGCACGGCGCCGGGCACGCCGGGCGCGCGGTTC 4487870 Query 160332 AGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCT 160391 ||||||||||||| ||| ||||||||||||||||||||||| | ||| || | ||| Sbjct 4487871 AGGGTGGCCCACACGTGCTCGTCGGGGCTGTACGTGTCCTTGGCCCACTCGAGGAA---- 4487926 Query 160392 CCGATTAACCT----GTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTA 160447 ||| | ||| |||| ||| ||||| ||| || | || | | | ||| Sbjct 4487927 CCGCTGCGCCTCGGGGTCCTCCAGCACGTGCCGCACGAAGCCCCGCGTGGCCGCGATGTA 4487986 Query 160448 CGCGCTGCCGGAGAATATCGGTATGGGTATAGGCGGC-GTGTCTTTGTCCTGACCG-GTG 160505 ||||||||| | ||| || || | | | |||||| | | ||| | || ||| | | Sbjct 4487987 CGCGCTGCCCGTGAACATGGGCGAGCGCAGCGGCGGCGGCGGCTTCTCCGTGGCCGTGCG 4488046 Query 160506 TTAGA--CACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGT--G 160561 |||| ||| |||| || ||| || | |||||| | || ||||| | Sbjct 4488047 GTAGATGAACCGCTCCACTC-------GGTGCCGGTACTTCCAGCGCTCCTGCTTGTAAG 4488099 Query 160562 CGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGAC 160621 | |||| | | |||| ||| | ||||| || | ||| |||| ||| Sbjct 4488100 CCGTGGGCTTC--TCCGACTCCATGCTGTTCTGCCCCTGCAGCACCCGCAGCGCGCGGAC 4488157 Query 160622 GATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCA 160681 |||| ||| ||||||| || |||||||| ||||| ||| | ||||| ||| Sbjct 4488158 CGTCTCCGCGTTGGTCTTGATGGGGAAGTCGGTGCCGCAGGTGTTGAGGACGTAGCGCCA 4488217 Query 160682 TTTC---GCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCT 160738 | | |||| | ||||||||| |||||| || | || ||||||| ||| Sbjct 4488218 GGGCACGGGGCTC---TGCAGCAGGTCCCGCATGCAGTTGAGGTCGGCCTGCAGCCGGGA 4488274 Query 160739 CCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGA 160798 ||| || |||||||| ||| |||| || |||||||| |||||||| ||| || | Sbjct 4488275 CCACGAGGCGTACACCACGCTCTCCAGGCGGCTGGCCACGAAGACGTTGGGGAAGCAGGC 4488334 Query 160799 CACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCA 160858 |||| || ||| || | ||| ||||| | ||||||||| ||||| Sbjct 4488335 GGCGATGGCCCGCACGGCTCGCTGGAAGGCGGCGGGAGCCTTGCCGTCCACGTGGACGCA 4488394 Query 160859 ATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATG 160918 || | |||||| || ||||||| | | || | || |||||||||||| ||||| || Sbjct 4488395 GTAGACGTTCTGCGGGGCGTAGAGAGAGCGCAGGAGCCGCTCGAACATCTCGATCTTGTG 4488454 Query 160919 ATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960 ||||| || || ||||| || || || || |||| |||||| Sbjct 4488455 GTGGATGACCATGGAGTAAGCGATGGGGAAGTCGGCCTCCTC 4488496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577204682937120