Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq769 141 8e-29 seq756 114 1e-20 >seq769 Length=8760791 Score = 141 bits (156), Expect = 8e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || ||||| || || || || || || || ||| Sbjct 5351473 GATGCAGATCTTTGTGAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCCAG 5351532 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || || |||||||||||||||||||| || ||||||||||| Sbjct 5351533 TGACACCATTGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCA 5351592 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || |||||||| ||| | | | | |||| || || || Sbjct 5351593 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 5351652 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || ||||| || || || ||| ||||| |||| Sbjct 5351653 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCG 5351688 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 5350334 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 5350393 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| ||||| || ||||||||||| Sbjct 5350394 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCCGATCAG 5350453 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| || | | | | |||| || || ||| Sbjct 5350454 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 5350513 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| || || || || || ||| ||||| |||| Sbjct 5350514 ATTCAGAAAGAGTCCACTCTGCACCTGGTGCTGCG 5350548 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| || || || || || || || || || || ||| ||| Sbjct 5350789 GATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAACCCAG 5350848 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||||||||||||||| || || ||||||||||| Sbjct 5350849 TGACACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAAGAGGGCATTCCTCCCGATCA 5350908 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||| || || || |||||||| ||| | | | | |||| || || || Sbjct 5350909 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 5350968 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || || || || || || || | ||| |||| Sbjct 5350969 CATCCAGAAAGAGTCCACCCTGCATCTTGTGCTGCG 5351004 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || || || || ||| Sbjct 5351017 GATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 5351076 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||||||||| || ||||| ||||| Sbjct 5351077 TGACACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCA 5351136 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || |||||||| || | | | | |||| || || || Sbjct 5351137 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAA 5351196 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || ||||| || || || || | ||| |||| Sbjct 5351197 CATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCG 5351232 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || || || || ||| Sbjct 5351245 GATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 5351304 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| || | || | || || ||||||||||| || ||||| || ||||||||||| Sbjct 5351305 CGATACCATTGAGAACGTGAAGGCTAAGATCCAAGATAAGGAAGGCATTCCTCCCGATCA 5351364 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||| || || || ||||| || ||| | | | |||| || || || Sbjct 5351365 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTCGAAGATGGCCGTACCCTGTCTGACTACAA 5351424 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || || || || || || ||| ||||| |||| Sbjct 5351425 CATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCG 5351460 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || | || || || || || || || || || || ||| Sbjct 5350561 GATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 5350620 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| || | || | || || |||||||| || |||||||| || ||||||||||| Sbjct 5350621 CGATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCCGATCA 5350680 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||| || || || ||||| || || | | | | |||| || || || Sbjct 5350681 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTCGAAGACGGGCGCACCCTGTCTGACTACAA 5350740 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || || | ||| |||| || | ||||| Sbjct 5350741 CATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGTCTGAGGGGAGG 5350788 >seq756 Length=11697260 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || ||||| || || | || || ||| ||| Sbjct 3815426 GATGCAGATCTTCGTCAAGACCCTGACTGGCAAAACCATCACCTTGGAGGTTGAACCCAG 3815485 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || ||||| ||||| || || Sbjct 3815486 TGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCTGACCA 3815545 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||||||||||| ||||| |||||||| ||| | | | |||| || || || Sbjct 3815546 ACAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGCACACTGTCCGACTACAA 3815605 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || ||||| || || || || | ||| |||| Sbjct 3815606 CATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCG 3815641 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || || | || || ||| ||| Sbjct 3814970 GATGCAGATCTTCGTGAAGACACTGACCGGGAAGACCATCACATTGGAGGTGGAACCCAG 3815029 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| || || || || || || || || || Sbjct 3815030 TGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCACCTGACCA 3815089 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||| ||||| |||||||| ||| | | | |||| |||||||| Sbjct 3815090 GCAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGCACATTGTCTGATTATAA 3815149 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| || || || || | ||| |||| |||| || ||| Sbjct 3815150 CATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTGCGGGGCGGC 3815198 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || |||||||| || || | || || ||| ||| | Sbjct 3815199 ATGCAGATCTTTGTGAAGACCTTGACAGGTAAAACCATCACCTTGGAGGTTGAACCCAGC 3815258 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || ||| Sbjct 3815259 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAA 3815318 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||| || || ||||| ||||| ||| | | | |||| || |||||| Sbjct 3815319 CAGAGGCTGATCTTCGCTGGCAAACAACTGGAAGATGGGCGCACACTGTCCGACTATAAC 3815378 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || || | ||| |||| Sbjct 3815379 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCG 3815413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449886285075360