Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1 228 1e-53 seq253 123 4e-22 seq450 100 5e-15 >seq1 Length=175656249 Score = 228 bits (252), Expect = 1e-53 Identities = 204/256 (80%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| || ||| ||| Sbjct 43872827 TGTACTTGGTGACCGCCTTGGTGCCCTCCGAGACCGCGTGCTTGGCCAGCTCTCCGGGCA 43872886 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 43872887 GCAGCAGGCGCACGGCTGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 43872946 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| ||||||| || | |||||||||||||| ||||||| Sbjct 43872947 GCGCCAGGCGCGAGGCCTCACCCGCGATGCGCTCAAAGATGTCGTTGACAAAGGAGTTCA 43873006 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| |||||||||| |||||||||||||||||| |||||||||| Sbjct 43873007 TGATGCCCATGGCTTTGGAGGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 43873066 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 43873067 ACACGTAGATCGAGTA 43873082 Score = 214 bits (236), Expect = 3e-49 Identities = 201/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| || ||| ||| Sbjct 43760032 TGTACTTGGTGACCGCCTTGGTGCCCTCCGAGACCGCGTGCTTGGCCAGCTCACCGGGCA 43760091 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 43760092 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 43760151 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 43760152 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 43760211 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 43760212 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 43760271 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 43760272 ACACGTAGATCGAGTA 43760287 Score = 214 bits (236), Expect = 3e-49 Identities = 201/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| || ||| ||| Sbjct 43792364 TGTACTTGGTGACCGCCTTGGTGCCCTCCGAGACCGCGTGCTTGGCCAGCTCACCGGGCA 43792305 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 43792304 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 43792245 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 43792244 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 43792185 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 43792184 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 43792125 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 43792124 ACACGTAGATCGAGTA 43792109 Score = 210 bits (232), Expect = 3e-48 Identities = 193/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| || ||| ||| Sbjct 43785721 TGTACTTGGTGACCGCCTTGGTGCCCTCCGAGACCGCGTGCTTGGCCAGCTCACCGGGCA 43785780 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 43785781 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 43785840 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 43785841 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 43785900 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 43785901 TGATGCTCATGGCTTTAGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 43785960 Query 1485710 AAAC 1485713 | || Sbjct 43785961 ACAC 43785964 Score = 210 bits (232), Expect = 3e-48 Identities = 193/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| || ||| ||| Sbjct 43835513 TGTACTTGGTGACCGCCTTGGTGCCCTCCGAGACCGCGTGCTTGGCCAGCTCACCGGGCA 43835572 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 43835573 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 43835632 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 43835633 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 43835692 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 43835693 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 43835752 Query 1485710 AAAC 1485713 | || Sbjct 43835753 ACAC 43835756 Score = 206 bits (228), Expect = 4e-47 Identities = 192/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| || ||| ||| Sbjct 43777988 TGTACTTGGTGACCGCCTTGGTGCCCTCCGAGACCGCGTGCTTGGCCAGCTCACCGGGCA 43777929 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 43777928 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 43777869 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 43777868 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 43777809 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| |||||||||||||||||| |||||||||| Sbjct 43777808 TGATGCCCATGGCCTTGGACGAGATGCCAGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 43777749 Query 1485710 AAAC 1485713 | || Sbjct 43777748 ATAC 43777745 Score = 178 bits (196), Expect = 2e-38 Identities = 190/246 (77%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| || ||| ||| Sbjct 14229529 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCTCCGGGCA 14229588 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||| | ||| | | || ||| ||| | | | ||| || | Sbjct 14229589 GCAGCAGGCGCACGGCTGTCTGCACCTCTCTGCTGGTGATGGTGGAGTGGTGGTT-GTAC 14229647 Query 1485590 -GCGCCAGGCGGCCGGCCT-CGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 || ||||||| |||| | |||| | || || | ||||| |||||||| ||||| Sbjct 14229648 TGCACCAGGCGCGATGCCTCCACTGCC-AGCCGCTCAAAGATGTCATTGACAAATGAGTT 14229706 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||| | |||| ||||||||| ||||||||| |||||||| |||||||| Sbjct 14229707 CATGATGCCCATGGCTTTGGAGGAGATGCCAGTGTCGGGGTGGACCTGCTTTAGCACCTT 14229766 Query 1485708 GTAAAC 1485713 ||| || Sbjct 14229767 GTAGAC 14229772 Score = 109 bits (120), Expect = 9e-18 Identities = 204/283 (72%), Gaps = 30/283 (11%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| || ||| ||| Sbjct 43854738 TGTACTTGGTGACCGCCTTGGTGCCCTCCGAGACCGCGTGCTTGGCCAGCTCACCGGGCA 43854797 Query 1485530 TGATCAGGCGCACGGCGGTCTGG-ATCTCGCGGGTGCCGAT---CGTGTTGCGCTTGTTA 1485585 | ||| |||||||| |||||| ||||| || | ||| || | | |||||||| Sbjct 43854798 GCAGCAGCCGCACGGCCGTCTGGAATCTCCCGCGACGTGATAGGCGAGGT-CGCTTGTTT 43854856 Query 1485586 G----TGCGCGCCAG--GCGGCCGGCCTCG----GTGCCGATGCGGT-CGATCATGTCGT 1485634 | ||||| | || |||| |||||| ||| ||| ||| | ||| ||||||| Sbjct 43854857 GTAGTTGCGCTCAAGGCGCGGAACGCCTCGCCCCGTG-CGA-GCGCTGCGAAGATGTCGT 43854914 Query 1485635 TGACAAACGA-GTTCATGATCGACATCG--ATTTGTTGGAG-ATGC--CCACGTCGGG-- 1485686 |||| ||||| ||||||||| ||| | || | ||| |||| || |||||| Sbjct 43854915 TGACGAACGATGTTCATGATGCCCATGGGCCTTGGGACGAGAATGCCACCGTGTCGGGCG 43854974 Query 1485687 -GTGCA-CCTGCTTGAGCACC--TTGTAAACAAAGGACGAGTA 1485725 |||| ||||||| |||||| ||||| || || |||||| Sbjct 43854975 ACTGCAGCCTGCTTCAGCACCCTTTGTACACGTAGATCGAGTA 43855017 Score = 89.7 bits (98), Expect = 8e-12 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| || ||| ||| Sbjct 43846612 TGTACTTGGTGACCGCCTTGGTGCCCTCCGAGACCGCGTGCTTGGCCAGCTCACCGGGCA 43846671 Query 1485530 TGATCAGGCGCACGGCGGTCTG 1485551 | ||| |||||||| ||||| Sbjct 43846672 GCAGCAGCCGCACGGCCGTCTG 43846693 >seq253 Length=134823679 Score = 123 bits (136), Expect = 4e-22 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| || || || || |||||| ||||||| || ||| ||| Sbjct 150787 TGTACTTGGTGACAGCCTTGGTGCCTTCGGACACAGCGTGCTTGGCCAGCTCACCGGGCA 150728 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||| | ||| | | || ||| ||| | | | ||| || | Sbjct 150727 GCAGGAGCCGCACGGCTGTCTGCACCTCTCTGCTGGTGATGGTGGAGTGGTGGTT-GTAC 150669 Query 1485590 -GCGCCAGGCGGCCGGCCT-CGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 || ||||||| |||| | |||| | || || | ||||| |||||||| ||||| Sbjct 150668 TGCACCAGGCGCGATGCCTCCACTGCC-AGCCGCTCAAAGATGTCATTGACAAATGAGTT 150610 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 |||||| ||| | ||| |||||| || | ||| |||||||||||| Sbjct 150609 CATGATGCTCATGGCCTTGGAGGAGATTCCAATGTCAGGGTGCACCTGC 150561 >seq450 Length=100941466 Score = 100 bits (110), Expect = 5e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || ||||| ||||||||||||||||| |||||||||| ||| || ||| Sbjct 88060647 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 88060588 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || |||||||||| | || || || ||||||||| || |||||||| || Sbjct 88060587 TACTGGATGGGGAAGATGACGAACCGCCGGGGGTTCTCCCGCAGCAGCGGTTC 88060535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916032374383268