Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coturnix_20japonica_20[refseq_20GCF_5F001577835.1_202016-03-01] 2,012 sequences; 927,656,957 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq769 134 1e-26 seq756 104 2e-17 >seq769 Length=8760791 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | |||||||| | ||| || ||||| ||||| || ||||| || || | Sbjct 5351016 CCTCCCCTGAGGCGCAGCACAAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 5350957 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || |||||||| | |||| || |||||||| || ||| Sbjct 5350956 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGA 5350897 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | || || || | || | |||||| |||| || Sbjct 5350896 ATGCCCTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGTTCAACC 5350837 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || |||||||| | |||||| || || |||||||| Sbjct 5350836 TCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 5350790 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | |||||||||| || || ||||| || || || ||||| || || | Sbjct 5351700 CCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 5351641 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||||||| | |||| || |||||||| || ||| Sbjct 5351640 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 5351581 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | || || ||| |||| | |||||| | || || Sbjct 5351580 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACC 5351521 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || ||||| | ||| || ||||| |||||||| Sbjct 5351520 TCAAGGGTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTGCAT 5351474 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | |||||||| | ||| || ||||| || || || ||||| || || | Sbjct 5351244 CCACCCCTGAGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 5351185 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || || || ||||||||| | |||| || |||||||| || ||| Sbjct 5351184 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 5351125 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | || || || | || | |||||| | || || Sbjct 5351124 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACC 5351065 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || |||||||| | ||| || ||||| |||||||| Sbjct 5351064 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5351018 >seq756 Length=11697260 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | |||||||| | ||| || ||||| || || || |||||||| || | Sbjct 3815425 CCTCCCCTGAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAC 3815366 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || |||||||||||||| | |||| || || || || || || Sbjct 3815365 AGTGTGCGCCCATCTTCCAGTTGTTTGCCAGCGAAGATCAGCCTCTGTTGGTCAGGGGGG 3815306 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || || || | || | ||||| |||| || Sbjct 3815305 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCAACC 3815246 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || ||||| || || ||||| || ||||| |||||||| Sbjct 3815245 TCCAAGGTGATGGTTTTACCTGTCAAGGTCTTCACAAAGATCTGCAT 3815199 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618 || |||| || |||||||| | ||| || ||||| || || || ||||||||||| | | Sbjct 3815197 CCGCCCCGCAGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTATAATCAGAC 3815138 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 ||| ||||| ||| || || || || |||||| | ||||| || ||||| || || || Sbjct 3815137 AAT-GTGCGCCCATCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGTGG 3815079 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| || || || | || |||||| | || | |||||| |||| || Sbjct 3815078 GATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCAC 3815019 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | || || || || || || | || || || || |||||||| || Sbjct 3815018 CTCCAATGTGATGGTCTTCCCGGTCAGTGTCTTCACGAAGATCTGCATCTT 3814968 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | |||||||| | ||| || ||||| || || || ||||| || || | Sbjct 3815653 CCGCCCCTGAGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3815594 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || || |||||| | ||||| || || || || || || Sbjct 3815593 AGTGTGCGCCCATCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGTTGGTCAGGAGGG 3815534 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || || || | || | |||||| |||| || Sbjct 3815533 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAACC 3815474 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || ||||||||||| | ||| || || || |||||||| Sbjct 3815473 TCCAAGGTGATGGTTTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 3815427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385209753943692